RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 HSD17B11Q8NBQ5 300 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 CMTM2Q8TAZ6 248 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 GNPNAT1Q96EK6 184 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 ST6GAL2Q96JF0 529 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 KLF12Q9Y4X4 402 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 PGPA6NDG6 321 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 G3V3Q6 166 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 ARL14EPLP0DKL9 152 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 HOXA5P20719 270 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 TDRG1Q3Y452 100 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 OR2T35Q8NGX2 323 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 ZNRF2Q8NHG8 242 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 RAB24Q969Q5 203 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 ATG101Q9BSB4 218 aa11.19□□□□□ -0.62
CCDC88C-209ENST00000554872 DNAH2Q9P225 4427 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 TRAV26-1A0A087WT03 109 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 RTL8CO15255 209 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 NUDT3O95989 172 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 CCL18P55774 89 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 ZNF415Q09FC8 603 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 ARPC5LQ9BPX5 153 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 TMPRSS5Q9H3S3 457 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 FAT2Q9NYQ8 4349 aa11.18□□□□□ -0.62
CCDC88C-209ENST00000554872 FXYD6-FXYD2A0A087WZ82 144 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 BORCS7-ASMTA0A0B4J1R7 106 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 EIF3GO75821 320 aaKnown RBP eCLIP11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 GCHFRP30047 84 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 Q6ZQT7 251 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 C5orf17Q8NAS9 161 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 SH3BGRL3Q9H299 93 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 TMEM167BQ9NRX6 74 aa11.17□□□□□ -0.62
CCDC88C-209ENST00000554872 TRGV2A0A075B6R0 118 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 TRGV1A0A0A0MS02 117 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 A0A1B0GVY2 172 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 TAAR5O14804 337 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 CXorf1O96002 111 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 OR5I1Q13606 314 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 RPL7L1Q6DKI1 246 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 GOLT1AQ6ZVE7 132 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 HYLS1Q96M11 299 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 UPK3BQ9BT76 320 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 ACTR3CQ9C0K3 210 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 LINC00588Q9Y4M8 146 aa11.16□□□□□ -0.62
CCDC88C-209ENST00000554872 IGLV2-18A0A075B6J9 118 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 TRGV11A0A075B6L2 103 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 FBLL1A6NHQ2 334 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 M0R2N4 97 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 HMGB3O15347 200 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 SOHLH1Q5JUK2 328 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 SPXQ9BT56 116 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 MUC4Q99102 2169 aa11.15□□□□□ -0.62
CCDC88C-209ENST00000554872 DNAH17Q9UFH2 4485 aa11.15□□□□□ -0.63
CCDC88C-209ENST00000554872 TCRAP04437 139 aa11.14□□□□□ -0.63
CCDC88C-209ENST00000554872 SLAQ13239 276 aa11.14□□□□□ -0.63
CCDC88C-209ENST00000554872 FAM159AQ6UWV7 190 aa11.14□□□□□ -0.63
CCDC88C-209ENST00000554872 TVP23CQ96ET8 276 aa11.14□□□□□ -0.63
CCDC88C-209ENST00000554872 VSIG2Q96IQ7 327 aa11.14□□□□□ -0.63
CCDC88C-209ENST00000554872 TRAV21A0A0B4J279 112 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 NBDYA0A0U1RRE5 68 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 A0A1W2PRE2 83 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 GGTLC3B5MD39 225 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 SSX7Q7RTT5 188 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 RASL10AQ92737 203 aa11.13□□□□□ -0.63
CCDC88C-209ENST00000554872 TRAV8-1A0A0A6YYK1 113 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 CTXND1A0A1B0GTU2 59 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 PRSS29PA6NIE9 313 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 K7EQM0 130 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 GNG5P63218 68 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 ZNF345Q14585 488 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 MUC21Q5SSG8 566 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 C1orf134Q5TEV5 83 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 IQCF2Q8IXL9 164 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 NDFIP1Q9BT67 221 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 TREM1Q9NP99 234 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 RPH3ALQ9UNE2 315 aa11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 MRPS16Q9Y3D3 137 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-209ENST00000554872 A0A096LPF7 62 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 A0A0J9YY99 117 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 IGLV2-11P01706 119 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 BTF3P20290 206 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 ZNF726P1Q15940 193 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 CYB561D1Q8N8Q1 229 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 TMEM75Q8N9X5 138 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 KCNS1Q96KK3 526 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 CYTL1Q9NRR1 136 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 MRPL16Q9NX20 251 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 MDFICQ9P1T7 246 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 PRO0255Q9UI72 69 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 EPDR1Q9UM22 224 aa11.11□□□□□ -0.63
CCDC88C-209ENST00000554872 ARPC5O15511 151 aa11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 TMEM183BQ1AE95 376 aa11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 TTC32Q5I0X7 151 aa11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 TMEM183AQ8IXX5 376 aa11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 NKX6-2Q9C056 277 aaPredicted RBP11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 PKHD1P08F94 4074 aa11.1□□□□□ -0.63
CCDC88C-209ENST00000554872 IGHV3-16A0A0C4DH30 117 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 A0A1W2PPQ1 181 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 CRYBA4P53673 196 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 SUMO1P63165 101 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 FHL2Q14192 279 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms