RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 SRIP30626 198 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 PCP4P48539 62 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 RRAS2P62070 204 aaPredicted RBP4.82□□□□□ -1.64
ATXN3-219ENST00000553488 POLR2GP62487 172 aaKnown RBP eCLIP4.82□□□□□ -1.64
ATXN3-219ENST00000553488 ERCC8Q13216 396 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 SLAQ13239 276 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 PPP1R1AQ13522 171 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 IL18Q14116 193 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 WFDC2Q14508 124 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 ZNF674Q2M3X9 581 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 LCE1AQ5T7P2 110 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 Q6ZQT7 251 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 S100A7AQ86SG5 101 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 ZNF546Q86UE3 836 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 Q8N9P0 234 aaPredicted RBP4.82□□□□□ -1.64
ATXN3-219ENST00000553488 MRPL53Q96EL3 112 aaKnown RBP4.82□□□□□ -1.64
ATXN3-219ENST00000553488 MRPL32Q9BYC8 188 aaKnown RBP4.82□□□□□ -1.64
ATXN3-219ENST00000553488 MCUBQ9NWR8 336 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 RNF24Q9Y225 148 aa4.82□□□□□ -1.64
ATXN3-219ENST00000553488 AGPAT2O15120 278 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 PSCAO43653 123 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 SSSCA1O60232 199 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 ZNF253O75346 499 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 MPDU1O75352 247 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 SFT2D2O95562 160 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 OXTP01178 125 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 HOXB5P09067 269 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 SFTA3P0C7M3 94 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 ZNF415Q09FC8 603 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 ARL16Q0P5N6 197 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 LINC01556Q5JQF7 62 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 SCXQ7RTU7 201 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 IQCF2Q8IXL9 164 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 ZFAND2AQ8N6M9 145 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 ZNF479Q96JC4 524 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 MGST2Q99735 147 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 NPVFQ9HCQ7 196 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 PSENENQ9NZ42 101 aa4.81□□□□□ -1.64
ATXN3-219ENST00000553488 RABL2AQ9UBK7 228 aaPredicted RBP4.81□□□□□ -1.64
ATXN3-219ENST00000553488 RCL1Q9Y2P8 373 aaKnown RBP4.81□□□□□ -1.64
ATXN3-219ENST00000553488 IGHV1OR15-1A0A075B7D0 117 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 TRAV5A0A0B4J249 113 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 IBA57-AS1B1ANH7 110 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 E5RGE8 158 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 COX7A2P2O60397 106 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 NDUFB4O95168 129 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 METTL15P1P0C7V9 234 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 SMIM18P0DKX4 95 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 SPCS2Q15005 226 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 GUK1Q16774 197 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 OR10G4Q8NGN3 311 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 RPL36ALQ969Q0 106 aaKnown RBP4.8□□□□□ -1.64
ATXN3-219ENST00000553488 DIRAS2Q96HU8 199 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 SMIM8Q96KF7 97 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 SOSTQ9BQB4 213 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 AGPAT4-IT1Q9H0P7 198 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 CCDC59Q9P031 241 aaKnown RBP4.8□□□□□ -1.64
ATXN3-219ENST00000553488 MGAT4CQ9UBM8 478 aa4.8□□□□□ -1.64
ATXN3-219ENST00000553488 TRBV19A0A075B6N1 114 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 TRGV4A0A0C4DH28 118 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 IGHV3-38A0A0C4DH36 116 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 LOC100131303A0A0U1RQF7 123 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 GOSR2O14653 212 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 ORM1P02763 201 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 NMBP08949 121 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 RNASE4P34096 147 aaKnown RBP4.79□□□□□ -1.64
ATXN3-219ENST00000553488 C10orf113Q5VZT2 155 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 C9orf47Q6ZRZ4 202 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 OR10P1Q8NGE3 313 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 PCNPQ8WW12 178 aaKnown RBP4.79□□□□□ -1.64
ATXN3-219ENST00000553488 RASL10AQ92737 203 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 LINC00477Q96M19 166 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 TXNDC17Q9BRA2 123 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 Q9HAA7 133 aa4.79□□□□□ -1.64
ATXN3-219ENST00000553488 IGKV2-40A0A087WW87 121 aaPredicted RBP4.78□□□□□ -1.64
ATXN3-219ENST00000553488 C9JCJ5 164 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 TSC22D2O75157 780 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 IGKV2D-40P01614 121 aaPredicted RBP4.78□□□□□ -1.64
ATXN3-219ENST00000553488 GPX1P07203 203 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 SUMO2P61956 95 aaKnown RBP4.78□□□□□ -1.64
ATXN3-219ENST00000553488 PDE6HQ13956 83 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 BLNKQ8WV28 456 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 GGACTQ9BVM4 153 aa4.78□□□□□ -1.64
ATXN3-219ENST00000553488 RSL24D1Q9UHA3 163 aaKnown RBP4.78□□□□□ -1.64
ATXN3-219ENST00000553488 TRAV4A0A0B4J268 109 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 FAUP35544 74 aaKnown RBP4.77□□□□□ -1.65
ATXN3-219ENST00000553488 HNRNPA3P51991 378 aaKnown RBP4.77□□□□□ -1.65
ATXN3-219ENST00000553488 TAS2R30P59541 319 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 UBE2MP61081 183 aaKnown RBP4.77□□□□□ -1.65
ATXN3-219ENST00000553488 LAGE3Q14657 143 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 ZNF846Q147U1 533 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 LINC01620Q4KN68 170 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 MIC13Q5XKP0 118 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 PET117Q6UWS5 81 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 EXOC3-AS1Q8N2X6 119 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 MCFD2Q8NI22 146 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 DYNC2LI1Q8TCX1 351 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 RAB2BQ8WUD1 216 aa4.77□□□□□ -1.65
ATXN3-219ENST00000553488 SLC25A21Q9BQT8 299 aaPredicted RBP4.77□□□□□ -1.65
ATXN3-219ENST00000553488 SRRQ9GZT4 340 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms