RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TRBV9A0A0B4J1U6 114 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 OR4C46A6NHA9 309 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 M0R143 59 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 BUB3O43684 328 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 MGPP08493 103 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 ZNF688P0C7X2 276 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 C1orf194Q5T5A4 169 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 FAM162BQ5T6X4 162 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 PRSS57Q6UWY2 283 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 C8orf86Q6ZUL3 223 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 FAM231DQ6ZW35 169 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 LINC00477Q96M19 166 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 PRELID3AQ96N28 172 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 PPP1R14DQ9NXH3 145 aa4.31□□□□□ -1.72
LIMA1-215ENST00000552823 NBEAL2Q6ZNJ1 2754 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 MRPS12O15235 138 aaKnown RBP4.3□□□□□ -1.72
LIMA1-215ENST00000552823 PSG9Q00887 426 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 SPANXN1Q5VSR9 72 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 OR10AG1Q8NH19 301 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 PIFOQ8TCI5 191 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 TMEM14CQ9P0S9 112 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 ZFP30Q9Y2G7 519 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV12-2A0A075B6T6 113 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV9-1A0A075B6T8 112 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 IGHV1-24A0A0C4DH33 117 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 TCAPO15273 167 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 PRM2P04554 102 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 NEGR1Q7Z3B1 354 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 RHPN1-AS1Q9BWJ2 59 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 PRSS22Q9GZN4 317 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 AP5S1Q9NUS5 200 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 C11orf21Q9P2W6 132 aa4.3□□□□□ -1.72
LIMA1-215ENST00000552823 ATRQ13535 2644 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 NPYP01303 97 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 IGLL1P15814 213 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 SRSF2Q01130 221 aaKnown RBP4.29□□□□□ -1.72
LIMA1-215ENST00000552823 OR10J3Q5JRS4 329 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 S100A7AQ86SG5 101 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 STPG4Q8N801 248 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 C20orf173Q96LM9 149 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 NAA38Q9BRA0 125 aaKnown RBP4.29□□□□□ -1.72
LIMA1-215ENST00000552823 NBPF19A0A087WUL8 3843 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 CLPSL1A2RUU4 121 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 CBY3A6NI87 242 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 FABP5P3A8MUU1 101 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 GNRH2O43555 120 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 IGHG4P01861 327 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 RPLP1P05386 114 aaKnown RBP4.29□□□□□ -1.72
LIMA1-215ENST00000552823 SYNJ2BPP57105 145 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 MRPL51Q4U2R6 128 aaKnown RBP4.29□□□□□ -1.72
LIMA1-215ENST00000552823 C18orf65Q6ZTR6 163 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 TMEM70Q9BUB7 260 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 TTTY13Q9BZ97 58 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 RNF24Q9Y225 148 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 UBR5O95071 2799 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-215ENST00000552823 A0A1B0GXF2 115 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 OOSP1A8MZH6 123 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 B4DSR2 109 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 F5H697 171 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 PRSS1P07477 247 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 COX19Q49B96 90 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 FAM74A4Q5TZK3 123 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 NPFFR1Q9GZQ6 430 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 ZFAND3Q9H8U3 227 aa4.29□□□□□ -1.72
LIMA1-215ENST00000552823 HSBP1L1C9JCN9 74 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 CACNG7P62955 275 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 EBI3Q14213 229 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 SAPCD1Q5SSQ6 148 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 PRR9Q5T870 116 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 Q8N976 141 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 MIEN1Q9BRT3 115 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 ZNF492Q9P255 531 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 SETXQ7Z333 2677 aaKnown RBP4.28□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV8-2A0A0B4J237 113 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 TRAV12-3A0A0B4J271 114 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 K7EMI3 77 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 BMI1P35226 326 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 NMUP48645 174 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 RAB9AP51151 201 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 PSMG4Q5JS54 123 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 C14orf178Q8N769 122 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-215ENST00000552823 Q96MF0 132 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 MAP1LC3CQ9BXW4 147 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 JPT2Q9H910 190 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 SIGLEC8Q9NYZ4 499 aa4.28□□□□□ -1.72
LIMA1-215ENST00000552823 UNC79Q9P2D8 2635 aa4.28□□□□□ -1.73
LIMA1-215ENST00000552823 A0A087X0K7 114 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 IGKV3D-20A0A0C4DH25 116 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 HOXA3O43365 443 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF124Q15973 351 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 SRSF8Q9BRL6 282 aaKnown RBP4.27□□□□□ -1.73
LIMA1-215ENST00000552823 IGHV3OR16-12A0A075B7B8 117 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 IGHV3-73A0A0B4J1V6 119 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 SYS1-DBNDD2H3BUS1 97 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 EMP1P54849 157 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 TEX43Q6ZNM6 134 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 ORMDL3Q8N138 153 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 OR10J6PQ8NGY7 276 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 KLK9Q9UKQ9 250 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms