RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 UBE2E2Q96LR5 201 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 CD300EQ496F6 205 aaPredicted RBP12.82□□□□□ -0.36
CUX1-213ENST00000549414 SAMD13Q5VXD3 122 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 Q8N7P7 452 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 SMIM12Q96EX1 92 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 GFRA4Q9GZZ7 299 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 I3L2K1 104 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 PRSS57Q6UWY2 283 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 STPG4Q8N801 248 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 PYGO2Q9BRQ0 406 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 LAGE3Q14657 143 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 TMEM95Q3KNT9 176 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 PAPPA-AS1Q5QFB9 102 aa12.81□□□□□ -0.36
CUX1-213ENST00000549414 IGHV3-64A0A075B6Q5 118 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 IGHV7-81A0A0B4J1V7 117 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 SPRY2O43597 315 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 CIDEAO60543 219 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 IGKCP01834 107 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 CT83Q5H943 113 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 ORMDL2Q53FV1 153 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 C1orf122Q6ZSJ8 110 aa12.8□□□□□ -0.36
CUX1-213ENST00000549414 TNFRSF6BO95407 300 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 FAM104BQ5XKR9 115 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 IGHV4-39P01824 125 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 GP9P14770 177 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 MEIG1Q5JSS6 88 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 TRAV26-2A0A0B4J265 109 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 F6UB75 175 aa12.79□□□□□ -0.36
CUX1-213ENST00000549414 IGHV4-38-2P0DP08 117 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 VCX2Q9H322 139 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 MRPL16Q9NX20 251 aaKnown RBP12.78□□□□□ -0.36
CUX1-213ENST00000549414 IGHV4-30-2A0A087WSY4 118 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 CENPVL3A0A0U1RRI6 287 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 TEX22C9J3V5 150 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 CHTOPQ9Y3Y2 248 aaKnown RBP12.78□□□□□ -0.36
CUX1-213ENST00000549414 FAM231BA6NCW3 169 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 BLCAPP62952 87 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 SPINK13Q1W4C9 94 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 DPH3P1Q9H4G8 78 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 MRPL51Q4U2R6 128 aaKnown RBP12.78□□□□□ -0.36
CUX1-213ENST00000549414 ZC2HC1BQ5TFG8 222 aa12.78□□□□□ -0.36
CUX1-213ENST00000549414 LTAP01374 205 aa12.77□□□□□ -0.36
CUX1-213ENST00000549414 DEFB131AP59861 70 aa12.77□□□□□ -0.36
CUX1-213ENST00000549414 DYNAPQ8N1N2 210 aa12.77□□□□□ -0.36
CUX1-213ENST00000549414 OR2K2Q8NGT1 345 aa12.77□□□□□ -0.36
CUX1-213ENST00000549414 SNHG12Q9BXW3 62 aa12.77□□□□□ -0.37
CUX1-213ENST00000549414 TOMM7Q9P0U1 55 aa12.77□□□□□ -0.37
CUX1-213ENST00000549414 SPCS1Q9Y6A9 102 aa12.77□□□□□ -0.37
CUX1-213ENST00000549414 ZNF876PQ49A33 203 aa12.77□□□□□ -0.37
CUX1-213ENST00000549414 CSTL1Q9H114 145 aa12.77□□□□□ -0.37
CUX1-213ENST00000549414 IGHV4-59P01825 116 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 TRAV12-2A0A075B6T6 113 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 KNCNA6PVL3 124 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 EIF4EBP1Q13541 118 aaPredicted RBP12.76□□□□□ -0.37
CUX1-213ENST00000549414 IGHV1-24A0A0C4DH33 117 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 IGHV3-53P01767 116 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 MAJINQ3KP22 176 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 ZNF503Q96F45 646 aa12.76□□□□□ -0.37
CUX1-213ENST00000549414 PRSS46E5RG02 174 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 CTSGP08311 255 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 GATA3P23771 443 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 KLK9Q9UKQ9 250 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 IGLV11-55A0A075B6I3 123 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 TRGV4A0A0C4DH28 118 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 MRAP2Q96G30 205 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 CDH23Q9H251 3354 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 EGR2P11161 476 aaPredicted RBP12.75□□□□□ -0.37
CUX1-213ENST00000549414 Q8N9W7 124 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 TRIOO75962 3097 aa12.75□□□□□ -0.37
CUX1-213ENST00000549414 A0A0U1RRA0 63 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 ZNF815PA8K554 130 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 ORAOV1Q8WV07 137 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 AGPAT4-IT1Q9H0P7 198 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 MS4A6AQ9H2W1 248 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 TRGV11A0A075B6L2 103 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 NPYP01303 97 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 SMAGPQ0VAQ4 97 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 KLF2Q9Y5W3 355 aaPredicted RBP12.74□□□□□ -0.37
CUX1-213ENST00000549414 HOXA3O43365 443 aaPredicted RBP12.74□□□□□ -0.37
CUX1-213ENST00000549414 TMEM190Q8WZ59 177 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 C20orf144Q9BQM9 153 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 DEFB112Q30KQ8 113 aa12.74□□□□□ -0.37
CUX1-213ENST00000549414 ANXA2RQ3ZCQ2 193 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 IGLL1P15814 213 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 FOXE3Q13461 319 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 SIGLEC8Q9NYZ4 499 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 TRANK1O15050 2925 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 IGKV1D-37A0A075B6S9 117 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 CD28P10747 220 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 NEGR1Q7Z3B1 354 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 C2orf88Q9BSF0 95 aa12.73□□□□□ -0.37
CUX1-213ENST00000549414 NPBQ8NG41 125 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 NDUFA4O00483 81 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 TDRG1Q3Y452 100 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 IGF2BP2-AS1Q96M15 143 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 COX6CP09669 75 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 IGLC2P0DOY2 106 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 IGLC3P0DOY3 106 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 FBXL19-AS1Q494R0 122 aa12.72□□□□□ -0.37
CUX1-213ENST00000549414 BCL6BQ8N143 479 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms