RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EXOC3-AS1Q8N2X6 119 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 BLNKQ8WV28 456 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 SLIRPQ9GZT3 109 aaKnown RBP11.31□□□□□ -0.6
VPS29-204ENST00000548259 SLC39A9Q9NUM3 307 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 ZNF492Q9P255 531 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 PLA2G2DQ9UNK4 145 aa11.31□□□□□ -0.6
VPS29-204ENST00000548259 IGKV2-40A0A087WW87 121 aaPredicted RBP11.3□□□□□ -0.6
VPS29-204ENST00000548259 TRAV4A0A0B4J268 109 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 NDUFB4O95168 129 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 IGKV2D-40P01614 121 aaPredicted RBP11.3□□□□□ -0.6
VPS29-204ENST00000548259 CAV2P51636 162 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 ZNF846Q147U1 533 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 OR10J3Q5JRS4 329 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 FAM122CQ6P4D5 195 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 FAM159AQ6UWV7 190 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 OR4C5Q8NGB2 326 aa11.3□□□□□ -0.6
VPS29-204ENST00000548259 NAP1L6A6NFF2 107 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 OXTP01178 125 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 PFN1P07737 140 aaKnown RBP11.29□□□□□ -0.6
VPS29-204ENST00000548259 S100A5P33763 92 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 BAXQ07812 192 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 MUC21Q5SSG8 566 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 WDR83OSQ9Y284 106 aa11.29□□□□□ -0.6
VPS29-204ENST00000548259 NDUFB6O95139 128 aa11.28□□□□□ -0.6
VPS29-204ENST00000548259 MBPP02686 304 aaPredicted RBP11.28□□□□□ -0.6
VPS29-204ENST00000548259 CSN1S1P47710 185 aa11.28□□□□□ -0.6
VPS29-204ENST00000548259 LAGE3Q14657 143 aa11.28□□□□□ -0.6
VPS29-204ENST00000548259 PRR9Q5T870 116 aa11.28□□□□□ -0.6
VPS29-204ENST00000548259 Q6ZSA8 131 aa11.28□□□□□ -0.6
VPS29-204ENST00000548259 CST7O76096 145 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 PYYP10082 97 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 PVALBP20472 110 aaPredicted RBP11.27□□□□□ -0.61
VPS29-204ENST00000548259 HBG1P69891 147 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 HBG2P69892 147 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 ZNF266Q14584 549 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 TMEM183BQ1AE95 376 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 TMEM183AQ8IXX5 376 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 SH3BGRL3Q9H299 93 aa11.27□□□□□ -0.61
VPS29-204ENST00000548259 UBE2L5PA0A1B0GUS4 154 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 NBEAP1P0C6P0 100 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 S100A11P31949 105 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 BAK1Q16611 211 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 CHAC2Q8WUX2 184 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 V9GYH0 126 aa11.26□□□□□ -0.61
VPS29-204ENST00000548259 M0R2P5 195 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 ASAH1Q13510 395 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 Q6ZQT7 251 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 STX12Q86Y82 276 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 ATP5SQ99766 215 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 PRADC1Q9BSG0 188 aa11.25□□□□□ -0.61
VPS29-204ENST00000548259 LSM5Q9Y4Y9 91 aaKnown RBP11.25□□□□□ -0.61
VPS29-204ENST00000548259 RBAKDNA6NC62 111 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 CENPXA8MT69 81 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 IGHV3-30P01768 117 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 IGHV3-33P01772 117 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 IGHV3-30-3P0DP02 117 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 IGHV3-30-5P0DP03 117 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 FGF7P21781 194 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 VWC2Q2TAL6 325 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 Q8TAT8 98 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 MITD1Q8WV92 249 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 FLVCR2Q9UPI3 526 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 LENEPQ9Y5L5 61 aa11.24□□□□□ -0.61
VPS29-204ENST00000548259 TRAV8-3A0A0A6YYJ7 113 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 LOC100131303A0A0U1RQF7 123 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 SULT1A1P50225 295 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 ATP6V1FQ16864 119 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 CNPY1Q3B7I2 92 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 ACOT6Q3I5F7 207 aaPredicted RBP11.23□□□□□ -0.61
VPS29-204ENST00000548259 TOR2AQ5JU69 321 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 LELP1Q5T871 98 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 TRIQKQ629K1 86 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 Q6AWC8 147 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 OR51M1Q9H341 326 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 NAGKQ9UJ70 344 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 COX11Q9Y6N1 276 aa11.23□□□□□ -0.61
VPS29-204ENST00000548259 FBLL1A6NHQ2 334 aaKnown RBP11.22□□□□□ -0.61
VPS29-204ENST00000548259 FAM25EA8MYX2 175 aa11.22□□□□□ -0.61
VPS29-204ENST00000548259 H3BMQ9 156 aa11.22□□□□□ -0.61
VPS29-204ENST00000548259 CIDEAO60543 219 aa11.22□□□□□ -0.61
VPS29-204ENST00000548259 GATA1P15976 413 aaPredicted RBP11.22□□□□□ -0.61
VPS29-204ENST00000548259 SPANXN2Q5MJ10 180 aa11.22□□□□□ -0.61
VPS29-204ENST00000548259 FAM24AA6NFZ4 105 aa11.21□□□□□ -0.61
VPS29-204ENST00000548259 RHOHQ15669 191 aa11.21□□□□□ -0.61
VPS29-204ENST00000548259 SCXQ7RTU7 201 aa11.21□□□□□ -0.61
VPS29-204ENST00000548259 PAXXQ9BUH6 204 aa11.21□□□□□ -0.61
VPS29-204ENST00000548259 SLC25A2Q9BXI2 301 aa11.21□□□□□ -0.61
VPS29-204ENST00000548259 UBR4Q5T4S7 5183 aa11.21□□□□□ -0.62
VPS29-204ENST00000548259 HMCN2Q8NDA2 5059 aa11.2□□□□□ -0.62
VPS29-204ENST00000548259 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.2□□□□□ -0.62
VPS29-204ENST00000548259 IGHV3-16A0A0C4DH30 117 aa11.2□□□□□ -0.62
VPS29-204ENST00000548259 C5orf51A6NDU8 294 aa11.2□□□□□ -0.62
VPS29-204ENST00000548259 RS1O15537 224 aa11.2□□□□□ -0.62
VPS29-204ENST00000548259 KCNIP2Q9NS61 270 aa11.2□□□□□ -0.62
VPS29-204ENST00000548259 TRBV6-4A0A1B0GX49 114 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 RBFOX3A6NFN3 312 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 LECT2O14960 151 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 RMI2Q96E14 147 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 CHAC1Q9BUX1 264 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 GTSF1LQ9H1H1 148 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms