RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 COQ2Q96H96 371 aa6.9□□□□□ -1.31
CLIP1-218ENST00000545889 ZNF414Q96IQ9 312 aa6.9□□□□□ -1.31
CLIP1-218ENST00000545889 C11orf68Q9H3H3 251 aaKnown RBP6.9□□□□□ -1.31
CLIP1-218ENST00000545889 MSMPQ1L6U9 139 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 CD300EQ496F6 205 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 HAPLN4Q86UW8 402 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 FAM90A9PA6NNJ1 464 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 LINC00158P58513 81 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IL15RAQ13261 267 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 C6orf226Q5I0X4 101 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 FGF23Q9GZV9 251 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IGLV3-9A0A075B6K5 115 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IGKV2-40A0A087WW87 121 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IGKV2D-40P01614 121 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IGLV3-1P01715 115 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 TYMSP04818 313 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 DUX4L9Q6RFH8 374 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 LHFPL1Q86WI0 220 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 IL36BQ9NZH7 164 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 CDK2AP2O75956 126 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 GUSBP1Q15486 140 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 ADAMTSL5Q6ZMM2 481 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 PYGO2Q9BRQ0 406 aa6.89□□□□□ -1.31
CLIP1-218ENST00000545889 PRRC2AP48634 2157 aaKnown RBP6.89□□□□□ -1.31
CLIP1-218ENST00000545889 USP34Q70CQ2 3546 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 SCO2A0A1W2PP80 73 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 IGHV4-39P01824 125 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 LOXP28300 417 aaPredicted RBP6.88□□□□□ -1.31
CLIP1-218ENST00000545889 TTC32Q5I0X7 151 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 DEFB125Q8N687 156 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 FOXC2Q99958 501 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 PCSK5Q92824 1860 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 ZNF561-AS1K7EIQ3 104 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 ETDBQ3ZM63 59 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 PIFOQ8TCI5 191 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 A0A1W2PRE2 83 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 WIPF3A6NGB9 483 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 SHISA9B4DS77 424 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE7O76087 117 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE12FP0CL80 117 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE12GP0CL81 117 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE12IP0CL82 117 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 OCC1Q8TAD7 63 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 Q8TCH9 128 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 APOHP02749 345 aaPredicted RBP6.88□□□□□ -1.31
CLIP1-218ENST00000545889 IGLC1P0CG04 106 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 ZFP36P26651 326 aaKnown RBP6.88□□□□□ -1.31
CLIP1-218ENST00000545889 RPP25LQ8N5L8 163 aaKnown RBP6.88□□□□□ -1.31
CLIP1-218ENST00000545889 DMXL1Q9Y485 3027 aa6.88□□□□□ -1.31
CLIP1-218ENST00000545889 CDSNQ15517 529 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 PSG3Q16557 428 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 SPINK13Q1W4C9 94 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 C5orf30Q96GV9 206 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 LSM4Q9Y4Z0 139 aaKnown RBP6.87□□□□□ -1.31
CLIP1-218ENST00000545889 DSCAMO60469 2012 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 TRAV1-1A0A0B4J248 108 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 KIR3DS1Q14943 382 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 DAZAP2Q15038 168 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-218ENST00000545889 SAMD5Q5TGI4 173 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 Q6P435 159 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 TRGV9Q99603 122 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 MRPL27Q9P0M9 148 aaKnown RBP6.87□□□□□ -1.31
CLIP1-218ENST00000545889 WDR83OSQ9Y284 106 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 KNCNA6PVL3 124 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 SMIM13P0DJ93 91 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 GP9P14770 177 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 SSBP2P81877 361 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-218ENST00000545889 TSKUQ8WUA8 353 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 MBD3L1Q8WWY6 194 aa6.87□□□□□ -1.31
CLIP1-218ENST00000545889 HIGD1CA8MV81 97 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 IGKV1-16P04430 117 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 PAX9P55771 341 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 SS18Q15532 418 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 EXOC3-AS1Q8N2X6 119 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 C10orf105Q8TEF2 133 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 SSBP4Q9BWG4 385 aaPredicted RBP6.86□□□□□ -1.31
CLIP1-218ENST00000545889 SEC11AP67812 179 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 IGFL4Q6B9Z1 124 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 PHLDA1Q8WV24 401 aaPredicted RBP6.86□□□□□ -1.31
CLIP1-218ENST00000545889 CENPEQ02224 2701 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 NACAE9PAV3 2078 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 TRAV3A0A0B4J244 114 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 C19orf84I3L1E1 186 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 C8orf86Q6ZUL3 223 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 RNF182Q8N6D2 247 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 RNASE7Q9H1E1 156 aaKnown RBP6.86□□□□□ -1.31
CLIP1-218ENST00000545889 ZNRD1Q9P1U0 126 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 TRAV5A0A0B4J249 113 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 F8WEM9 126 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 EVI2AP22794 236 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 ZNF726P1Q15940 193 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 TTC9CQ8N5M4 171 aa6.86□□□□□ -1.31
CLIP1-218ENST00000545889 MRPL16Q9NX20 251 aaKnown RBP6.86□□□□□ -1.31
CLIP1-218ENST00000545889 TRBV9A0A0B4J1U6 114 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 TRAV13-1A0A0B4J241 112 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE12JA6NER3 117 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 K7EP34 96 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE4Q13068 117 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE5Q13069 117 aa6.85□□□□□ -1.31
CLIP1-218ENST00000545889 GAGE13Q4V321 117 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms