RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ANK3Q12955 4377 aaKnown RBP4.7□□□□□ -1.66
SYNE1-239ENST00000545694 TRAV8-2A0A0B4J237 113 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 A0A1B0GUT8 65 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM189A5PLL7 270 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 F2Z2F3 143 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 SOCS3O14543 225 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 SMAD7O15105 426 aaKnown RBP4.7□□□□□ -1.66
SYNE1-239ENST00000545694 TRBV12-3P01733 135 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 APCSP02743 223 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 CRISP2P16562 243 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 SNRPD3P62318 126 aaKnown RBP4.7□□□□□ -1.66
SYNE1-239ENST00000545694 UNQ9165/PRO28630Q6UXU0 137 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 KLHDC1Q8N7A1 406 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 C4orf3Q8WVX3 66 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 ODF3Q96PU9 254 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 C16orf95Q9H693 158 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 YAE1D1Q9NRH1 226 aa4.7□□□□□ -1.66
SYNE1-239ENST00000545694 SETD2Q9BYW2 2564 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-239ENST00000545694 SORL1Q92673 2214 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 WNK1Q9H4A3 2382 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 DNAJC9-AS1A6NH13 148 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 LINC01619G3V211 115 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 SH2D1AO60880 128 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 NDUFA7O95182 113 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 APOHP02749 345 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-239ENST00000545694 CBLN1P23435 193 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 TCL1AP56279 114 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 RAB4BP61018 213 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 KRTAP1-1Q07627 177 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 KLF5Q13887 457 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM95Q3KNT9 176 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 LINC00322Q6ZN03 302 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF493Q6ZR52 646 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 TCF24Q7RTU0 167 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 APRG1Q8IVJ8 170 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF738Q8NE65 137 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 SGK494Q96LW2 274 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 VGLL1Q99990 258 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF747Q9BV97 191 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 CNFNQ9BYD5 112 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 KRTAP9-8Q9BYQ0 159 aa4.69□□□□□ -1.66
SYNE1-239ENST00000545694 NSD1Q96L73 2696 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3OR16-8A0A075B7F1 116 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IGKV2-40A0A087WW87 121 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 TRAV25A0A0B4J276 109 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3-66A0A0C4DH42 116 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM213A2RRL7 107 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 C9orf118A6NHY6 69 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF207O43670 478 aaKnown RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 DUSP14O95147 198 aaKnown RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 CA1P00915 261 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IGKV2D-40P01614 121 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 SRD5A1P18405 259 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 RAB4AP20338 218 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 HOXD3P31249 432 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 CTRLP40313 264 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 CRIP1P50238 77 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 HILS1P60008 231 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 RPL11P62913 178 aaKnown RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 S100A12P80511 92 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 TM4SF20Q53R12 229 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 MRPL54Q6P161 138 aaKnown RBP4.68□□□□□ -1.66
SYNE1-239ENST00000545694 Q6ZSV7 163 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IL17RELQ6ZVW7 336 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 BAGE3Q86Y29 109 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 OR8A1Q8NGG7 326 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 GTSF1Q8WW33 167 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 DPF1Q92782 380 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 PGLYRP4Q96LB8 373 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 AGPAT4-IT1Q9H0P7 198 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 SIGLEC8Q9NYZ4 499 aa4.68□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3OR16-13A0A075B7E8 117 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3-74A0A0B4J1X5 117 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 TRAV21A0A0B4J279 112 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 A0A1B0GUS0 222 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 C2orf70A6NJV1 201 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF705FA8MVS1 300 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-239ENST00000545694 IGLC6P0CF74 106 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 PMCHP20382 165 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 TSPOP30536 169 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 CACNG7P62955 275 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 RNF182Q8N6D2 247 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 FER1L6-AS1Q8NA97 138 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 OR1N2Q8NGR9 330 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 DCANP1Q8TF63 244 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 FAM19A4Q96LR4 140 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 C12orf57Q99622 126 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 HIST1H2BLQ99880 126 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 GPR61Q9BZJ8 451 aa4.67□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV4-4A0A075B6R2 117 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV4OR15-8A0A075B7B6 117 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 A0A087WW49 117 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 LOC102724200A0A096LPH7 203 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3-49A0A0A0MS15 119 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 PRAC2D3DTV9 90 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 K7EQG2 157 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 SPINK4O60575 86 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 ORM1P02763 201 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 PPBPP02775 128 aa4.66□□□□□ -1.66
SYNE1-239ENST00000545694 GPX1P07203 203 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms