RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 HYLS1Q96M11 299 aa8.33□□□□□ -1.08
HDAC4-216ENST00000544989 FBLL1A6NHQ2 334 aaKnown RBP8.32□□□□□ -1.08
HDAC4-216ENST00000544989 GCHFRP30047 84 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 TCL1AP56279 114 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 LGALS9BQ3B8N2 356 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 Q6AWC8 147 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 RPL7L1Q6DKI1 246 aaKnown RBP8.32□□□□□ -1.08
HDAC4-216ENST00000544989 C5orf17Q8NAS9 161 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 SUN5Q8TC36 379 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 C18orf15Q96N68 181 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 NDFIP1Q9BT67 221 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 DNAH6Q9C0G6 4158 aa8.32□□□□□ -1.08
HDAC4-216ENST00000544989 TRGV2A0A075B6R0 118 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GAGE12BA1L429 117 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 H3BNG1 76 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GAGE7O76087 117 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GAGE12FP0CL80 117 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GAGE12GP0CL81 117 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GAGE12IP0CL82 117 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 ZNF415Q09FC8 603 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 AKR1C8PQ5T2L2 129 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GOLT1AQ6ZVE7 132 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 C11orf72Q8NBR9 251 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 Q8TAT8 98 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 ATG101Q9BSB4 218 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 NKX6-2Q9C056 277 aaPredicted RBP8.31□□□□□ -1.08
HDAC4-216ENST00000544989 SH3BGRL3Q9H299 93 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 GSN-AS1Q9NRJ2 163 aa8.31□□□□□ -1.08
HDAC4-216ENST00000544989 TRGV11A0A075B6L2 103 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 CTXND1A0A1B0GTU2 59 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 A0A1W2PRE2 83 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 HMGB3O15347 200 aaKnown RBP8.3□□□□□ -1.08
HDAC4-216ENST00000544989 ARPC5O15511 151 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 CCL18P55774 89 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 ZNF345Q14585 488 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 FAM159AQ6UWV7 190 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 RPH3ALQ9UNE2 315 aa8.3□□□□□ -1.08
HDAC4-216ENST00000544989 TRGV1A0A0A0MS02 117 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 TRAV21A0A0B4J279 112 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 HMSDA8MTL9 139 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 SPINK4O60575 86 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 NUDT3O95989 172 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 SLAQ13239 276 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 OR5I1Q13606 314 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 TDRG1Q3Y452 100 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 PRR9Q5T870 116 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 Q6ZTI0 123 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 LINC00336Q6ZUF6 198 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 SPXQ9BT56 116 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 KLF12Q9Y4X4 402 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 PKHD1P08F94 4074 aa8.29□□□□□ -1.08
HDAC4-216ENST00000544989 A0A0D9SG52 128 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 G3V3Q6 166 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 EIF3GO75821 320 aaKnown RBP eCLIP8.28□□□□□ -1.08
HDAC4-216ENST00000544989 TCRAP04437 139 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 EIF5AP63241 154 aaKnown RBP8.28□□□□□ -1.08
HDAC4-216ENST00000544989 ZFP69Q49AA0 526 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 IQCF2Q8IXL9 164 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 CYB561D1Q8N8Q1 229 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 KCNS1Q96KK3 526 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 TREM1Q9NP99 234 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 TP53TG3Q9ULZ0 132 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 DNAH17Q9UFH2 4485 aa8.28□□□□□ -1.08
HDAC4-216ENST00000544989 TRAV26-1A0A087WT03 109 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 PPT1P50897 306 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 SUMO1P63165 101 aaKnown RBP8.27□□□□□ -1.09
HDAC4-216ENST00000544989 SOHLH1Q5JUK2 328 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 SAPCD1Q5SSQ6 148 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 KCNRGQ8N5I3 272 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 STOML3Q8TAV4 291 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 TCEAL7Q9BRU2 100 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 TMPRSS5Q9H3S3 457 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 EPDR1Q9UM22 224 aa8.27□□□□□ -1.09
HDAC4-216ENST00000544989 DYNC1H1Q14204 4646 aaKnown RBP8.26□□□□□ -1.09
HDAC4-216ENST00000544989 FAT2Q9NYQ8 4349 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 KANTRA0A1W2PQU2 76 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 UMAD1C9J7I0 102 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 GNG5P63218 68 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 TMEM183BQ1AE95 376 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 MUC21Q5SSG8 566 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 TMEM183AQ8IXX5 376 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 TMEM75Q8N9X5 138 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 SDF2L1Q9HCN8 221 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 CYTL1Q9NRR1 136 aa8.26□□□□□ -1.09
HDAC4-216ENST00000544989 TRAV8-1A0A0A6YYK1 113 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 GGTLC3B5MD39 225 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 IFNA7P01567 189 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 SEC11BP0C7V7 166 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 FLI1Q01543 452 aaPredicted RBP8.25□□□□□ -1.09
HDAC4-216ENST00000544989 SMUG1Q53HV7 270 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 RASL10AQ92737 203 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 HIST1H2BAQ96A08 127 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 NAGKQ9UJ70 344 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 PSG8Q9UQ74 426 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 ARL2-SNX15V9GYD0 113 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 DNAH11Q96DT5 4516 aa8.25□□□□□ -1.09
HDAC4-216ENST00000544989 DNAH2Q9P225 4427 aa8.24□□□□□ -1.09
HDAC4-216ENST00000544989 MUC4Q99102 2169 aa8.24□□□□□ -1.09
HDAC4-216ENST00000544989 MAP1LC3B2A6NCE7 125 aa8.24□□□□□ -1.09
HDAC4-216ENST00000544989 F6UZH7 168 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms