RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CMTM2Q8TAZ6 248 aa3.09□□□□□ -1.91
PRKDC-209ENST00000540819 SNHG12Q9BXW3 62 aa3.09□□□□□ -1.91
PRKDC-209ENST00000540819 ADGRL1O94910 1474 aa3.09□□□□□ -1.92
PRKDC-209ENST00000540819 IBA57-AS1B1ANH7 110 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 MCRIP1C9JLW8 97 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 IFITM1P13164 125 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 PYDC2Q56P42 97 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 KRTAP11-1Q8IUC1 163 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 PLPP5Q8NEB5 264 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 TMEM254Q8TBM7 123 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 LINC00526Q96FQ7 95 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 NOP16Q9Y3C1 178 aaKnown RBP3.08□□□□□ -1.92
PRKDC-209ENST00000540819 LHFPL6Q9Y693 200 aa3.08□□□□□ -1.92
PRKDC-209ENST00000540819 E7EQL1 145 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 J3QLW9 94 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 SPINK8P0C7L1 97 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 S100A10P60903 97 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 DEFB134Q4QY38 66 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 C9orf153Q5TBE3 101 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 Q6AWC8 147 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 LINC00269Q8N2A0 174 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 SVBPQ8N300 66 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 TTC9CQ8N5M4 171 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 OR4X2Q8NGF9 303 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 VSTM2AQ8TAG5 236 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 SMIM7Q9BQ49 75 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 PRO2289Q9P1D8 64 aa3.07□□□□□ -1.92
PRKDC-209ENST00000540819 C3orf85A0A1B0GTC6 90 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 SSR2P43308 183 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 TROQ12816 1431 aaPredicted RBP3.06□□□□□ -1.92
PRKDC-209ENST00000540819 BCORL1Q5H9F3 1711 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 LCE3AQ5TA76 89 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 OR2T2Q6IF00 324 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 FOXI2Q6ZQN5 318 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 FAM19A2Q8N3H0 131 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 C5orf17Q8NAS9 161 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 CECR2Q9BXF3 1484 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 ANKRD26Q9UPS8 1709 aa3.06□□□□□ -1.92
PRKDC-209ENST00000540819 COL11A1P12107 1806 aaPredicted RBP3.05□□□□□ -1.92
PRKDC-209ENST00000540819 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.05□□□□□ -1.92
PRKDC-209ENST00000540819 SLIT2O94813 1529 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 IGKV2-28A0A075B6P5 120 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 C5orf67F2Z3F1 127 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 EDF1O60869 148 aaKnown RBP3.05□□□□□ -1.92
PRKDC-209ENST00000540819 IGKV2D-28P01615 120 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 ASAH2BP0C7U1 165 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 MOBPQ13875 183 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 KRTAP13-3Q3SY46 172 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 Q6ZTI0 123 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 HEATR5BQ9P2D3 2071 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 MCM3APO60318 1980 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 PHIPQ8WWQ0 1821 aa3.05□□□□□ -1.92
PRKDC-209ENST00000540819 GLI3P10071 1580 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 SDK2Q58EX2 2172 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 LOC107984156A0A0G2JMH3 177 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 A0A1W2PNU3 283 aaPredicted RBP3.04□□□□□ -1.92
PRKDC-209ENST00000540819 MPC2O95563 127 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 CTSGP08311 255 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 CASC2Q6XLA1 102 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 Q6ZS92 163 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 ARL17AQ8IVW1 177 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 C9orf163Q8N9P6 203 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 LSM10Q969L4 123 aaKnown RBP3.04□□□□□ -1.92
PRKDC-209ENST00000540819 AQP10Q96PS8 301 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 FAIMQ9NVQ4 179 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 CCL26Q9Y258 94 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 COL24A1Q17RW2 1714 aa3.04□□□□□ -1.92
PRKDC-209ENST00000540819 MICAL3Q7RTP6 2002 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 NOTCH2Q04721 2471 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 MGAMO43451 1857 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 KIAA1551Q9HCM1 1747 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 IGKV3D-11A0A0A0MRZ8 115 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 TRAV10A0A0B4J240 114 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 TRAV12-1A0A0B4J245 112 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 TCRBV4S1A1TA0A5B7 111 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 ERC2-IT1O76042 136 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 BRS3P32247 399 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 C2orf82Q6UX34 121 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 SPTSSAQ969W0 71 aa3.03□□□□□ -1.92
PRKDC-209ENST00000540819 NSD3Q9BZ95 1437 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 NUMA1Q14980 2115 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 NINQ8N4C6 2090 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 GPR179Q6PRD1 2367 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 A0A1W2PRS3 328 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 RTL8CO15255 209 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 NDUFB6O95139 128 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 DEFB113Q30KQ7 82 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 C12orf73Q69YU5 71 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 SLC25A26Q70HW3 274 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 V9GYS6 101 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 CUL9Q8IWT3 2517 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 TRPM7Q96QT4 1865 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 RP1P56715 2156 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 FREM3P0C091 2139 aa3.02□□□□□ -1.93
PRKDC-209ENST00000540819 EML5Q05BV3 1969 aa3.01□□□□□ -1.93
PRKDC-209ENST00000540819 TRAV2A0A0B4J234 112 aa3.01□□□□□ -1.93
PRKDC-209ENST00000540819 TCRBV3S1A0A5B6 114 aa3.01□□□□□ -1.93
PRKDC-209ENST00000540819 OOSP1A8MZH6 123 aa3.01□□□□□ -1.93
PRKDC-209ENST00000540819 TMEM262E9PQX1 116 aa3.01□□□□□ -1.93
PRKDC-209ENST00000540819 IL5P05113 134 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms