RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SHANK2-AS3Q9BTD1 123 aa9.63□□□□□ -0.87
USP3-203ENST00000538686 IGKV1D-17A0A075B6S4 117 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 ATOX1O00244 68 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 ZNF833PQ6ZTB9 187 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 KLF14Q8TD94 323 aaPredicted RBP9.62□□□□□ -0.87
USP3-203ENST00000538686 METTL26Q96S19 204 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 XIRP2A4UGR9 3374 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 CGB1A6NKQ9 187 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 SRRM5B3KS81 715 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 GAS8-AS1O95177 125 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 TCF15Q12870 199 aa9.62□□□□□ -0.87
USP3-203ENST00000538686 E7EUB6 86 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 H3BRN7 92 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 RFPL3SP0C7P2 107 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 COX6A1P12074 109 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 Q1RN00 199 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 DPH3Q96FX2 82 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 LINC00574Q9H8X3 128 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 KLK5Q9Y337 293 aaPredicted RBP9.61□□□□□ -0.87
USP3-203ENST00000538686 TNCP24821 2201 aa9.61□□□□□ -0.87
USP3-203ENST00000538686 IGHV4-39P01824 125 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 COX6CP09669 75 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 GATA1P15976 413 aaPredicted RBP9.6□□□□□ -0.87
USP3-203ENST00000538686 ERCC8Q13216 396 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 SMIM2Q9BVW6 85 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 MSRB1Q9NZV6 116 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 MYO7AQ13402 2215 aa9.6□□□□□ -0.87
USP3-203ENST00000538686 TIMM8AO60220 97 aaPredicted RBP9.6□□□□□ -0.87
USP3-203ENST00000538686 A0A0G2JNJ9 132 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 A0A1W2PR77 199 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 C5orf67F2Z3F1 127 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 CDX4O14627 284 aaPredicted RBP9.59□□□□□ -0.87
USP3-203ENST00000538686 CNTFRP26992 372 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 VMA21Q3ZAQ7 101 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 FSCN3Q9NQT6 498 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 Q9UFV3 132 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 MSRB2Q9Y3D2 182 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 DNAH14Q0VDD8 3507 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 PCNX2A6NKB5 2137 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 H7C423 109 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 TM4SF5O14894 197 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 MALP21145 153 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 ZNF672Q499Z4 452 aaPredicted RBP9.59□□□□□ -0.87
USP3-203ENST00000538686 DEFB132Q7Z7B7 95 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 PIMREGQ9BSJ6 248 aa9.59□□□□□ -0.87
USP3-203ENST00000538686 RPUSD1Q9UJJ7 312 aaKnown RBP9.59□□□□□ -0.87
USP3-203ENST00000538686 UNC80Q8N2C7 3258 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 C17orf100A8MU93 164 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 WT1P19544 449 aaPredicted RBP9.58□□□□□ -0.88
USP3-203ENST00000538686 CEMP1Q6PRD7 247 aaPredicted RBP9.58□□□□□ -0.88
USP3-203ENST00000538686 C5orf38Q86SI9 138 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 KLHL30-AS1Q8NEE0 82 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 C2orf48Q96LS8 159 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 PRO0628Q9UI54 55 aa9.58□□□□□ -0.88
USP3-203ENST00000538686 FREM1Q5H8C1 2179 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 NXPH1P58417 271 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 GUSBP11Q6P575 273 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 BRCA2P51587 3418 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 M0R3E3 92 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 C10orf55Q5SWW7 151 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 C17orf77Q96MU5 243 aa9.57□□□□□ -0.88
USP3-203ENST00000538686 C11orf86A6NJI1 115 aa9.56□□□□□ -0.88
USP3-203ENST00000538686 FAM201AQ5SY85 155 aa9.56□□□□□ -0.88
USP3-203ENST00000538686 Q6ZS46 218 aa9.56□□□□□ -0.88
USP3-203ENST00000538686 ZNRF1Q8ND25 227 aa9.56□□□□□ -0.88
USP3-203ENST00000538686 SLC50A1Q9BRV3 221 aa9.56□□□□□ -0.88
USP3-203ENST00000538686 LGALS3P17931 250 aaKnown RBP9.55□□□□□ -0.88
USP3-203ENST00000538686 HIST1H4AP62805 103 aaKnown RBP9.55□□□□□ -0.88
USP3-203ENST00000538686 Q5XG85 94 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 HRCT1Q6UXD1 115 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 SZT2Q5T011 3432 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 BRWD1Q9NSI6 2320 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 IGHV1-69DA0A0B4J2H0 117 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 H7C2G1 150 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 TRIAP1O43715 76 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 C4orf26Q17RF5 130 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 HCP5Q6MZN7 132 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 SDIM1Q6ZPB5 146 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 PSMG3-AS1Q96PY0 264 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 CTSZQ9UBR2 303 aa9.55□□□□□ -0.88
USP3-203ENST00000538686 IGHV4-4A0A075B6R2 117 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 IGFBP4P22692 258 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 RUSC1-AS1Q66K80 236 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 C2orf66Q6UXQ4 117 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 ASCL5Q7RTU5 278 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 ZNF575Q86XF7 245 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 K7ENP7 123 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 IGLV2-23P01705 113 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 ELANEP08246 267 aa9.54□□□□□ -0.88
USP3-203ENST00000538686 ZNF22P17026 224 aaPredicted RBP9.54□□□□□ -0.88
USP3-203ENST00000538686 RPL27AP46776 148 aaKnown RBP9.54□□□□□ -0.88
USP3-203ENST00000538686 ZNF80P51504 273 aaPredicted RBP9.54□□□□□ -0.88
USP3-203ENST00000538686 DUX4L9Q6RFH8 374 aaPredicted RBP9.54□□□□□ -0.88
USP3-203ENST00000538686 KNL1Q8NG31 2342 aa9.53□□□□□ -0.88
USP3-203ENST00000538686 hADV29S1A0JD25 119 aa9.53□□□□□ -0.88
USP3-203ENST00000538686 TMEM223A0PJW6 202 aa9.53□□□□□ -0.88
USP3-203ENST00000538686 MBD3L4A6NDZ8 208 aaPredicted RBP9.53□□□□□ -0.88
USP3-203ENST00000538686 MBD3L3A6NE82 208 aaPredicted RBP9.53□□□□□ -0.88
USP3-203ENST00000538686 MBD3L5A6NJ08 208 aaPredicted RBP9.53□□□□□ -0.88
USP3-203ENST00000538686 J3QQQ9 107 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms