RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TRAV8-1A0A0A6YYK1 113 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 SERTM2A0A1B0GWG4 89 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 KANTRA0A1W2PQU2 76 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 C1QBP02746 253 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 DAD1P61803 113 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 DAZ2Q13117 558 aaKnown RBP9.17□□□□□ -0.94
VPS28-216ENST00000533806 Q6AWC8 147 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 CCDC28AQ8IWP9 274 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 STOML3Q8TAV4 291 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 MBD3L1Q8WWY6 194 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 FAM210BQ96KR6 192 aa9.17□□□□□ -0.94
VPS28-216ENST00000533806 ZNF471Q9BX82 626 aaPredicted RBP9.17□□□□□ -0.94
VPS28-216ENST00000533806 NOP10Q9NPE3 64 aaKnown RBP9.17□□□□□ -0.94
VPS28-216ENST00000533806 CBY3A6NI87 242 aa9.16□□□□□ -0.94
VPS28-216ENST00000533806 UMAD1C9J7I0 102 aa9.16□□□□□ -0.94
VPS28-216ENST00000533806 DEFB130BP0DP73 79 aa9.16□□□□□ -0.94
VPS28-216ENST00000533806 DEFB130AP0DP74 79 aa9.16□□□□□ -0.94
VPS28-216ENST00000533806 FGF8P55075 233 aaPredicted RBP9.16□□□□□ -0.94
VPS28-216ENST00000533806 EIF4E3Q8N5X7 224 aaKnown RBP9.16□□□□□ -0.94
VPS28-216ENST00000533806 IGHV1OR15-1A0A075B7D0 117 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 MAP1LC3B2A6NCE7 125 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 FAM74A7A6NL05 159 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 LY6G6CO95867 125 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 MAP1LC3BQ9GZQ8 125 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 GSN-AS1Q9NRJ2 163 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 TP53TG3Q9ULZ0 132 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 RPH3ALQ9UNE2 315 aa9.15□□□□□ -0.94
VPS28-216ENST00000533806 DNAH6Q9C0G6 4158 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 TPT1P13693 172 aaKnown RBP9.14□□□□□ -0.95
VPS28-216ENST00000533806 EIF5AP63241 154 aaKnown RBP9.14□□□□□ -0.95
VPS28-216ENST00000533806 TDRG1Q3Y452 100 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 IBA57Q5T440 356 aaKnown RBP9.14□□□□□ -0.95
VPS28-216ENST00000533806 DPPA3Q6W0C5 159 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 ZNF680Q8NEM1 530 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 SGK494Q96LW2 274 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 ATG101Q9BSB4 218 aa9.14□□□□□ -0.95
VPS28-216ENST00000533806 hCG_2014768A0A024R1R8 64 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 A0A1B0GVG6 124 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 PFDN1O60925 122 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 TCL1AP56279 114 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 UBE2G2P60604 165 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 AKAP14Q86UN6 197 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 IQCF2Q8IXL9 164 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 CYB561D1Q8N8Q1 229 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 TMEM75Q8N9X5 138 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 FAM213BQ8TBF2 198 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 LINC00479Q96M42 142 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 C18orf15Q96N68 181 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 NDUFAF3Q9BU61 184 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 NKX6-2Q9C056 277 aaPredicted RBP9.13□□□□□ -0.95
VPS28-216ENST00000533806 TREM1Q9NP99 234 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 PSG8Q9UQ74 426 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 KLF12Q9Y4X4 402 aa9.13□□□□□ -0.95
VPS28-216ENST00000533806 FBLL1A6NHQ2 334 aaKnown RBP9.12□□□□□ -0.95
VPS28-216ENST00000533806 SNURFLB1AK76 121 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 RGS13O14921 159 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 SPINK4O60575 86 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 ATP5G1P05496 136 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 HTN3P15516 51 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 ATP5G3P48201 142 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 ZNF80P51504 273 aaPredicted RBP9.12□□□□□ -0.95
VPS28-216ENST00000533806 FLI1Q01543 452 aaPredicted RBP9.12□□□□□ -0.95
VPS28-216ENST00000533806 Q6ZTI0 123 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 SFT2D1Q8WV19 159 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 ARL2-SNX15V9GYD0 113 aa9.12□□□□□ -0.95
VPS28-216ENST00000533806 EPPK1P58107 5090 aaKnown RBP9.12□□□□□ -0.95
VPS28-216ENST00000533806 TRAV21A0A0B4J279 112 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 GAGE12BA1L429 117 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 F6UZH7 168 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 K7EQM0 130 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 GAGE7O76087 117 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 GAGE12FP0CL80 117 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 GAGE12GP0CL81 117 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 GAGE12IP0CL82 117 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 MUC21Q5SSG8 566 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 TMEM88Q6PEY1 159 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 C9orf62Q8N4C0 152 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 HIST1H2BAQ96A08 127 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 MDFICQ9P1T7 246 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 C11orf21Q9P2W6 132 aa9.11□□□□□ -0.95
VPS28-216ENST00000533806 TRAV1-1A0A0B4J248 108 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 TRAV34A0A0B4J273 112 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 PEX7O00628 323 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 IFNA7P01567 189 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 H2AFB1P0C5Y9 115 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 LGALS9BQ3B8N2 356 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 COX8CQ7Z4L0 72 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 SLC51BQ86UW2 128 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 C8orf49Q96NF6 230 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 TCEAL7Q9BRU2 100 aa9.1□□□□□ -0.95
VPS28-216ENST00000533806 F5H768 121 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 GNRH2O43555 120 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 PAGE4O60829 102 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 HOXA5P20719 270 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 SULT1A2P50226 295 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 RAB5CP51148 216 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 SAPCD1Q5SSQ6 148 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 FAM159AQ6UWV7 190 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 PRNTQ86SH4 94 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 NDFIP1Q9BT67 221 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms