RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ZNF575Q86XF7 245 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 C20orf173Q96LM9 149 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 NKX6-2Q9C056 277 aaPredicted RBP11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 AAMDCQ9H7C9 122 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 TMEM189A5PLL7 270 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 SLC25A5P05141 298 aaKnown RBP11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 HTN3P15516 51 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 DEFB1P60022 68 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 NDUFA5Q16718 116 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 ZNF705AQ6ZN79 300 aaPredicted RBP11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 CCDC28AQ8IWP9 274 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 RNF182Q8N6D2 247 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 TXNDC17Q9BRA2 123 aa11.21□□□□□ -0.61
CHMP4A-207ENST00000533523 MYCBP2O75592 4640 aa11.21□□□□□ -0.62
CHMP4A-207ENST00000533523 ZNF705FA8MVS1 300 aaPredicted RBP11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 F6UB75 175 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 ZNF705DP0CH99 300 aaPredicted RBP11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 ZNF705BP0CI00 300 aaPredicted RBP11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 SOHLH1Q5JUK2 328 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 SLC7A5P1Q8MH63 180 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 C5orf17Q8NAS9 161 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 ZNF738Q8NE65 137 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 NEU1Q99519 415 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 TREM1Q9NP99 234 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 PRELID1Q9Y255 219 aa11.2□□□□□ -0.62
CHMP4A-207ENST00000533523 FAT1Q14517 4588 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 TEX48A0A1B0GUV7 120 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 SCO2A0A1W2PP80 73 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 A8MTW9 85 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 C9JQL5 133 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 F6UZH7 168 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 M0R3E3 92 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 GNG5P63218 68 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 PSG3Q16557 428 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 FAM222AQ5U5X8 452 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 UQCC3Q6UW78 93 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 EIF4E3Q8N5X7 224 aaKnown RBP11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 CMTM2Q8TAZ6 248 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 RPH3ALQ9UNE2 315 aa11.19□□□□□ -0.62
CHMP4A-207ENST00000533523 SMIM9A6NGZ8 99 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 PDE6DO43924 150 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 NDUFS6O75380 124 aaKnown RBP11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 SRP19P09132 144 aaKnown RBP11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 Q6ZR54 194 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 MRPL53Q96EL3 112 aaKnown RBP11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 FAM210BQ96KR6 192 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 TCEAL7Q9BRU2 100 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 NIPSNAP3BQ9BS92 247 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 SMDT1Q9H4I9 107 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 DKK2Q9UBU2 259 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 EPDR1Q9UM22 224 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 GOLT1BQ9Y3E0 138 aa11.18□□□□□ -0.62
CHMP4A-207ENST00000533523 PEX7O00628 323 aa11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 PRB4P10163 310 aaPredicted RBP11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 CSN1S1P47710 185 aa11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 CNN1P51911 297 aaKnown RBP11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 C11orf52Q96A22 123 aa11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 SLC35B3Q9H1N7 401 aa11.17□□□□□ -0.62
CHMP4A-207ENST00000533523 DIRC3C9JPN6 131 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 TMEM250H0YL14 139 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 C1orf134Q5TEV5 83 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 GOLT1AQ6ZVE7 132 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 ARL6IP6Q8N6S5 226 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 CYB561D1Q8N8Q1 229 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 OR8A1Q8NGG7 326 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 HIST1H2BAQ96A08 127 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 RPUSD4Q96CM3 377 aaKnown RBP11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 ATG101Q9BSB4 218 aa11.16□□□□□ -0.62
CHMP4A-207ENST00000533523 PRAC2D3DTV9 90 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 TCRAP04437 139 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 AKR1C3P42330 323 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 CEBPGP53567 150 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 HIST1H1AQ02539 215 aaPredicted RBP11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 TMEM88Q6PEY1 159 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 AMTNQ6UX39 209 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 IGF2BP2-AS1Q96M15 143 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 PPP1R14DQ9NXH3 145 aa11.15□□□□□ -0.62
CHMP4A-207ENST00000533523 IGKV2-40A0A087WW87 121 aaPredicted RBP11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 INSP01308 110 aa11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 IGKV2D-40P01614 121 aaPredicted RBP11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 SFTA3P0C7M3 94 aa11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 DAD1P61803 113 aa11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 RNF212Q495C1 297 aa11.14□□□□□ -0.63
CHMP4A-207ENST00000533523 TRAV34A0A0B4J273 112 aa11.13□□□□□ -0.63
CHMP4A-207ENST00000533523 LINC00479Q96M42 142 aa11.13□□□□□ -0.63
CHMP4A-207ENST00000533523 TMEM208Q9BTX3 173 aa11.13□□□□□ -0.63
CHMP4A-207ENST00000533523 DERL1Q9BUN8 251 aa11.13□□□□□ -0.63
CHMP4A-207ENST00000533523 SERTM2A0A1B0GWG4 89 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 TMEM218A2RU14 115 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 K7EQM0 130 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 SPINK13Q1W4C9 94 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 RRN3P1Q2M238 152 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 ZNF674Q2M3X9 581 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 C1orf158Q8N1D5 194 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 OR10J6PQ8NGY7 276 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 PARLQ9H300 379 aa11.12□□□□□ -0.63
CHMP4A-207ENST00000533523 UBR4Q5T4S7 5183 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 TRAV8-1A0A0A6YYK1 113 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 RBAKDNA6NC62 111 aa11.11□□□□□ -0.63
CHMP4A-207ENST00000533523 C16orf90A8MZG2 172 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms