RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TRAV8-1A0A0A6YYK1 113 aa14.11□□□□□ -0.15
CPSF1-209ENST00000532725 TVP23CQ96ET8 276 aa14.11□□□□□ -0.15
CPSF1-209ENST00000532725 TIMM8BQ9Y5J9 83 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-209ENST00000532725 SERTM2A0A1B0GWG4 89 aa14.1□□□□□ -0.15
CPSF1-209ENST00000532725 IGLL5B9A064 214 aa14.1□□□□□ -0.15
CPSF1-209ENST00000532725 DNAH1Q9P2D7 4330 aa14.1□□□□□ -0.15
CPSF1-209ENST00000532725 FAM74A7A6NL05 159 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 IGLV2-11P01706 119 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 UBE2G2P60604 165 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 DAD1P61803 113 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 ANXA2RQ3ZCQ2 193 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 DPPA3Q6W0C5 159 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 EIF4E3Q8N5X7 224 aaKnown RBP14.09□□□□□ -0.15
CPSF1-209ENST00000532725 FAM213BQ8TBF2 198 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 SGK494Q96LW2 274 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 NOP10Q9NPE3 64 aaKnown RBP14.09□□□□□ -0.15
CPSF1-209ENST00000532725 APLNQ9ULZ1 77 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 RYR2Q92736 4967 aa14.09□□□□□ -0.15
CPSF1-209ENST00000532725 TCTAP57738 103 aa14.08□□□□□ -0.16
CPSF1-209ENST00000532725 Q6AWC8 147 aa14.08□□□□□ -0.16
CPSF1-209ENST00000532725 SFT2D1Q8WV19 159 aa14.08□□□□□ -0.16
CPSF1-209ENST00000532725 NKX6-2Q9C056 277 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-209ENST00000532725 IGHV1OR15-1A0A075B7D0 117 aa14.07□□□□□ -0.16
CPSF1-209ENST00000532725 DEFB130BP0DP73 79 aa14.07□□□□□ -0.16
CPSF1-209ENST00000532725 DEFB130AP0DP74 79 aa14.07□□□□□ -0.16
CPSF1-209ENST00000532725 C11orf72Q8NBR9 251 aa14.07□□□□□ -0.16
CPSF1-209ENST00000532725 IGHV4-4A0A075B6R2 117 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 CBY3A6NI87 242 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 K7EQM0 130 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 RGS13O14921 159 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 DAZ2Q13117 558 aaKnown RBP14.06□□□□□ -0.16
CPSF1-209ENST00000532725 SLC51BQ86UW2 128 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 C9orf62Q8N4C0 152 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 LINC00612Q8N6U2 182 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 CYB561D1Q8N8Q1 229 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 LINC00476Q8WZB0 136 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 ATG101Q9BSB4 218 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 TREM1Q9NP99 234 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 TP53TG3Q9ULZ0 132 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 PSG8Q9UQ74 426 aa14.06□□□□□ -0.16
CPSF1-209ENST00000532725 IFNA7P01567 189 aa14.05□□□□□ -0.16
CPSF1-209ENST00000532725 H2AFB1P0C5Y9 115 aa14.05□□□□□ -0.16
CPSF1-209ENST00000532725 EIF5AL1Q6IS14 154 aaKnown RBP14.05□□□□□ -0.16
CPSF1-209ENST00000532725 LINC00479Q96M42 142 aa14.05□□□□□ -0.16
CPSF1-209ENST00000532725 GSN-AS1Q9NRJ2 163 aa14.05□□□□□ -0.16
CPSF1-209ENST00000532725 ALMS1Q8TCU4 4167 aa14.05□□□□□ -0.16
CPSF1-209ENST00000532725 SNURFLB1AK76 121 aa14.04□□□□□ -0.16
CPSF1-209ENST00000532725 RAB5CP51148 216 aa14.04□□□□□ -0.16
CPSF1-209ENST00000532725 FLI1Q01543 452 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-209ENST00000532725 TMEM75Q8N9X5 138 aa14.04□□□□□ -0.16
CPSF1-209ENST00000532725 ZNF680Q8NEM1 530 aa14.04□□□□□ -0.16
CPSF1-209ENST00000532725 FBLL1A6NHQ2 334 aaKnown RBP14.03□□□□□ -0.16
CPSF1-209ENST00000532725 ZFP69Q49AA0 526 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 HIST1H2BAQ96A08 127 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 FAM210BQ96KR6 192 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 C8orf49Q96NF6 230 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 KLF12Q9Y4X4 402 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 ARL2-SNX15V9GYD0 113 aa14.03□□□□□ -0.16
CPSF1-209ENST00000532725 TRAV34A0A0B4J273 112 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 A0A1B0GV50 99 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 F6UZH7 168 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 PEX7O00628 323 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 PAGE4O60829 102 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 LY6G6CO95867 125 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 HTN3P15516 51 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 SULT1A2P50226 295 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 MUC21Q5SSG8 566 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 IBA57Q5T440 356 aaKnown RBP14.02□□□□□ -0.17
CPSF1-209ENST00000532725 CST9LP1Q5W188 147 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 LGALS9CQ6DKI2 356 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 PRNTQ86SH4 94 aa14.02□□□□□ -0.17
CPSF1-209ENST00000532725 TRAV1-1A0A0B4J248 108 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 TRAV21A0A0B4J279 112 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 ZNF80P51504 273 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-209ENST00000532725 TCL1AP56279 114 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 TDRG1Q3Y452 100 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 NDFIP1Q9BT67 221 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 NDUFAF3Q9BU61 184 aa14.01□□□□□ -0.17
CPSF1-209ENST00000532725 ATP5G1P05496 136 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 ATP5G3P48201 142 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 CCL20P78556 96 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 SAPCD1Q5SSQ6 148 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 FAM159AQ6UWV7 190 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 Q6ZTI0 123 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 TCEAL7Q9BRU2 100 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 MDFICQ9P1T7 246 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 HYDINQ4G0P3 5121 aa14□□□□□ -0.17
CPSF1-209ENST00000532725 GAGE12BA1L429 117 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 SPINK4O60575 86 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 GAGE7O76087 117 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 GAGE12FP0CL80 117 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 GAGE12GP0CL81 117 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 GAGE12IP0CL82 117 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 VPS13DQ5THJ4 4388 aa13.99□□□□□ -0.17
CPSF1-209ENST00000532725 GNRH2O43555 120 aa13.98□□□□□ -0.17
CPSF1-209ENST00000532725 PPT1P50897 306 aa13.98□□□□□ -0.17
CPSF1-209ENST00000532725 SMUG1Q53HV7 270 aa13.98□□□□□ -0.17
CPSF1-209ENST00000532725 F5H768 121 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 GCGP01275 180 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 TMEM183BQ1AE95 376 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms