RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 INS-IGF2F8WCM5 200 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 M0R2P5 195 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 TDHQ8IZJ6 230 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 DTX2Q86UW9 622 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 Q8TAT8 98 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 KLF14Q8TD94 323 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 PIMREGQ9BSJ6 248 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 CFAP47Q6ZTR5 3102 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 UQCRQO14949 82 aa9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 TIMM8AO60220 97 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 SRSF2Q01130 221 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 TNRC6BQ9UPQ9 1833 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-213ENST00000511496 LMO7DNF2Z398 122 aa9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 IGKV1D-17A0A075B6S4 117 aa9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 IGKV2-40A0A087WW87 121 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 TRAV41A0A0B4J266 112 aa9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 IGKV2D-40P01614 121 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 ATXN8Q156A1 80 aa9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 MRPL14Q6P1L8 145 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 DUX4L9Q6RFH8 374 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-213ENST00000511496 TMEM170BQ5T4T1 132 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 CXXC4Q9H2H0 198 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 A0A0J9YY99 117 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 HOXB4P17483 251 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 FAM201AQ5SY85 155 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 KIR2DL5BQ8NHK3 375 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 DUX5Q96PT3 197 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 CEP290O15078 2479 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 TRBV19A0A075B6N1 114 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 NXPH1P58417 271 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 LY6DQ14210 128 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 C17orf82Q86X59 251 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 DCHS1Q96JQ0 3298 aa9.35□□□□□ -0.91
LIMCH1-213ENST00000511496 C17orf58Q2M2W7 97 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 DEFB104AQ8WTQ1 72 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 A0A1W2PR77 199 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 hADV29S1A0JD25 119 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 PINLYPA6NC86 204 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 CGB1A6NKQ9 187 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 ZNF80P51504 273 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 TMEM219Q86XT9 240 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 CADP27708 2225 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 A0A1B0GX51 115 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 IQCF6A8MYZ5 107 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 IGHV3-30P01768 117 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 IGHV3-30-5P0DP03 117 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 SIGLEC15Q6ZMC9 328 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 IL17RELQ6ZVW7 336 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 DEFB108BQ8NET1 73 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 LINC00526Q96FQ7 95 aa9.34□□□□□ -0.91
LIMCH1-213ENST00000511496 IGLV2-18A0A075B6J9 118 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 ZNF672Q499Z4 452 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 LTBP2Q14767 1821 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 TRBV10-2A0A0K0K1G8 114 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 IGHV3-33P01772 117 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 TRGV3P03979 118 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 PMS2CLQ68D20 193 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 IGFBPL1Q8WX77 278 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 EYSQ5T1H1 3165 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 MGAQ8IWI9 3026 aa9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 RPL13AP40429 203 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-213ENST00000511496 DSPP15924 2871 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 TPRP12270 2363 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 IGHV1-45A0A0A0MS14 117 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 IGFL4Q6B9Z1 124 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 POM121L12Q8N7R1 296 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 SCNM1Q9BWG6 230 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 TPSG1Q9NRR2 321 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 IGKV3D-15A0A087WSY6 115 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 LINC01546A6NGU7 62 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 EEF1AKMT3Q96AZ1 226 aa9.32□□□□□ -0.92
LIMCH1-213ENST00000511496 TRBV6-1A0A0K0K1D8 114 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 TRBV7-7A0A0K0K1E9 115 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 DSCR8Q96T75 97 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 C14orf178Q8N769 122 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 IMMP1LQ96LU5 166 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 TRAV12-1A0A0B4J245 112 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 ZNF883P0CG24 379 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 COX6B1P14854 86 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 PLGLAQ15195 96 aa9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 MAFAQ8NHW3 353 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-213ENST00000511496 MBD3L4A6NDZ8 208 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 MBD3L3A6NE82 208 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 MBD3L5A6NJ08 208 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 ENSAO43768 121 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 LYZL6O75951 148 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 Q6ZS52 159 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 COX6A1P12074 109 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 EBI3Q14213 229 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 SPINK14Q6IE38 97 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 NEXN-AS1Q8NBZ9 246 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 CEP250Q9BV73 2442 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 WNK2Q9Y3S1 2297 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 CD40P25942 277 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 CCL11P51671 97 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 MRPS21P82921 87 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 TEX36Q5VZQ5 186 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 TMEM14CQ9P0S9 112 aa9.3□□□□□ -0.92
LIMCH1-213ENST00000511496 SPRY2O43597 315 aa9.29□□□□□ -0.92
LIMCH1-213ENST00000511496 LINC00477Q96M19 166 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms