RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGHV2-70P01814 119 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNF625Q96I27 306 aaPredicted RBP13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 TMEM243Q9BU79 118 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 FAM120AOSQ5T036 256 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 OR11H6Q8NGC7 330 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 F5H768 121 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 NPYP01303 97 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 CFHR3Q02985 330 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 C20orf78Q9BR46 151 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 C22orf46C9J442 243 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 COX8AP10176 69 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNRF2Q8NHG8 242 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 LYPD6BQ8NI32 183 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 USF3Q68DE3 2245 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HEATR5AQ86XA9 2040 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 VWC2LB2RUY7 222 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HLA-DRB4P13762 266 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HLA-DRB4X5D2U9 266 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 ATP6V0BQ99437 205 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 CTSZQ9UBR2 303 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 CACNA1BQ00975 2339 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 IGFL2Q6UWQ7 119 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 SLX1AQ9BQ83 275 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 CACNA1HO95180 2353 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE7O76087 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12FP0CL80 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12GP0CL81 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12IP0CL82 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNF561-AS1K7EIQ3 104 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 HOXB4P17483 251 aaPredicted RBP13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 YLPM1P49750 1951 aaKnown RBP13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 CDK2AP2O75956 126 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 KRTAP27-1Q3LI81 207 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE2AQ6NT46 116 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 SNHG12Q9BXW3 62 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 MRPL53Q96EL3 112 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 ABCA1O95477 2261 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 C9orf118A6NHY6 69 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 F8VRH5 84 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 Q6ZSR3 168 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 IGLL1P15814 213 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 APOC4P55056 127 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 GTSF1LQ9H1H1 148 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 WNK2Q9Y3S1 2297 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 LHBP01229 141 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 MRPL35Q9NZE8 188 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 ABCA4P78363 2273 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 K7EN84 100 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 RBAKDNA6NC62 111 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 INAFM2P0DMQ5 153 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 NDUFA12Q9UI09 145 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 LENEPQ9Y5L5 61 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 WIPF2Q8TF74 440 aaPredicted RBP13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 DOCK9Q9BZ29 2069 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 PLXNB3Q9ULL4 1909 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 TAL2Q16559 108 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 FOXI2Q6ZQN5 318 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 FGF23Q9GZV9 251 aaPredicted RBP13.02□□□□□ -0.32
PCDHA1-203ENST00000504120 IGHV3-38A0A0C4DH36 116 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 H3BMM0 161 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 SPINK8P0C7L1 97 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 PFN2P35080 140 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 UBE2WQ96B02 151 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 IGF2-ASQ6U949 168 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 C17orf77Q96MU5 243 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 ZNF48Q96MX3 618 aaPredicted RBP13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 GAGE6Q13070 117 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 TCF15Q12870 199 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 SOCS3O14543 225 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 DYNAPQ8N1N2 210 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 PRSS33Q8NF86 280 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 AGPAT4-IT1Q9H0P7 198 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 CADP27708 2225 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 K7EMI3 77 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 HERVK_113P63121 156 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 ZNF493Q6ZR52 646 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 VPREB3Q9UKI3 123 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 DENND4CQ5VZ89 1909 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 J3QKU1 62 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 NDUFS7O75251 213 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 KLF5Q13887 457 aaPredicted RBP13□□□□□ -0.33
PCDHA1-203ENST00000504120 WT1P19544 449 aaPredicted RBP13□□□□□ -0.33
PCDHA1-203ENST00000504120 LURAP1LQ8IV03 231 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 SIVA1O15304 175 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 NPBQ8NG41 125 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 NBASA2RRP1 2371 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 CENPVL3A0A0U1RRI6 287 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 SPTAN1Q13813 2472 aaKnown RBP12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 EGR2P11161 476 aaPredicted RBP12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 F8W1H4 67 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 J3QQQ9 107 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 DEFB112Q30KQ8 113 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PRO1854Q9UHT4 67 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PLXND1Q9Y4D7 1925 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 DOCK7Q96N67 2140 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 HLA-DMBP28068 263 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 BVES-AS1Q5T3Y7 98 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 CEND1Q8N111 149 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 ASPHD1Q5U4P2 390 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PPDPFLQ8WWR9 84 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms