RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ZNF747Q9BV97 191 aa8.42□□□□□ -1.06
LIMCH1-205ENST00000503057 ZGRF1Q86YA3 2104 aa8.42□□□□□ -1.06
LIMCH1-205ENST00000503057 AGPAT4-IT1Q9H0P7 198 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 TMEM238C9JI98 176 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 RNF223E7ERA6 249 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 EML5Q05BV3 1969 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 KLHL30-AS1Q8NEE0 82 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 TRAV2A0A0B4J234 112 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 TRAV26-2A0A0B4J265 109 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 PLA2G5P39877 138 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 C2orf66Q6UXQ4 117 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 CFHR4Q92496 578 aa8.41□□□□□ -1.06
LIMCH1-205ENST00000503057 TMEM262E9PQX1 116 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 LCNL1Q6ZST4 164 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 C20orf78Q9BR46 151 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 LY6G5BQ8NDX9 201 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 C19orf71A6NCJ1 209 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 LINC01619G3V211 115 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 IGLV2-8P01709 118 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 MAJINQ3KP22 176 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 ATP6V0BQ99437 205 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 SMIM2Q9BVW6 85 aa8.4□□□□□ -1.06
LIMCH1-205ENST00000503057 SIRPDQ9H106 197 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 SPTBN2O15020 2390 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 MALRD1Q5VYJ5 2156 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV3-73A0A0B4J1V6 119 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 ODF3BA8MYP8 253 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 BUB3O43684 328 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 ZFP36P26651 326 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 C5orf56Q8N8D9 126 aa8.4□□□□□ -1.07
LIMCH1-205ENST00000503057 SIVA1O15304 175 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 DNAL4O96015 105 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 TP53TG1Q9Y2A0 90 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 ZNF318Q5VUA4 2279 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV1OR15-1A0A075B7D0 117 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 GAGE13Q4V321 117 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 CDKN1BP46527 198 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 Q5PR19 223 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 CRYGBP07316 175 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 DEFB131AP59861 70 aa8.39□□□□□ -1.07
LIMCH1-205ENST00000503057 K7EMI3 77 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV4-39P01824 125 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 ELANEP08246 267 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 SRSF2Q01130 221 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 NAA38Q9BRA0 125 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 SAP30O75446 220 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 SPINK13Q1W4C9 94 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 TTC32Q5I0X7 151 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 C11orf44Q8N8P7 122 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 KIAA1549Q9HCM3 1950 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 ADAMTS20P59510 1910 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV3-64A0A075B6Q5 118 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 TRGV4A0A0C4DH28 118 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV4-61A0A0C4DH41 118 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 FRMD6-AS1P0C7T7 363 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 C16orf54Q6UWD8 224 aa8.38□□□□□ -1.07
LIMCH1-205ENST00000503057 RPL36AP83881 106 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 FOXE3Q13461 319 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 PMVKQ15126 192 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 RPL36ALQ969Q0 106 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 FANCD2OSQ96PS1 177 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 MEGF9Q9H1U4 602 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 BVES-AS1Q5T3Y7 98 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 C9orf118A6NHY6 69 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 I3L3M4 83 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 PAX2Q02962 417 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 POLEQ07864 2286 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 HLA-DRB4P13762 266 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 DEFB104AQ8WTQ1 72 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 HLA-DRB4X5D2U9 266 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 USF3Q68DE3 2245 aa8.37□□□□□ -1.07
LIMCH1-205ENST00000503057 TRGV1A0A0A0MS02 117 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 A0A1B0GXF2 115 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 GAGE12BA1L429 117 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 ADARB2-AS1A8MUL3 147 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 RHODO00212 210 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 EMP1P54849 157 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 C10orf105Q8TEF2 133 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 KLK9Q9UKQ9 250 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 ERG28Q9UKR5 140 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 ARHGAP21Q5T5U3 1957 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 A0A1B0GV72 72 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 LINC01545Q5VT33 79 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 CHD3Q12873 2000 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 IGKV3D-20A0A0C4DH25 116 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 SDHAF1A6NFY7 115 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 NSUN5P1Q3KNT7 163 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 TDRG1Q3Y452 100 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 A0A087WX48 190 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 MYMXA0A1B0GTQ4 84 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 F8VRH5 84 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 CTRLP40313 264 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 MRPL35Q9NZE8 188 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 NPSP0C0P6 89 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV4-38-2P0DP08 117 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 TCTEX1D4Q5JR98 221 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 SFTA2Q6UW10 78 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 ZNF493Q6ZR52 646 aa8.36□□□□□ -1.07
LIMCH1-205ENST00000503057 A8MWV9 139 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms