RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MEOX2P50222 304 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 SERTAD4-AS1Q5TG53 156 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 IGFL4Q6B9Z1 124 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 LINC00305Q7Z4B0 112 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 RNASE8Q8TDE3 154 aaKnown RBP11.24□□□□□ -0.61
VIM-208ENST00000497849 RAB2AP61019 212 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 BLOC1S1P78537 153 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 ACOT6Q3I5F7 207 aaPredicted RBP11.23□□□□□ -0.61
VIM-208ENST00000497849 PXDC1Q5TGL8 231 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 DPPA3Q6W0C5 159 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 MIR17HGQ75NE6 70 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 TMEM256Q8N2U0 113 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 OR1L4Q8NGR5 311 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 OR10J6PQ8NGY7 276 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 FAM213BQ8TBF2 198 aa11.23□□□□□ -0.61
VIM-208ENST00000497849 PCNPQ8WW12 178 aaKnown RBP11.23□□□□□ -0.61
VIM-208ENST00000497849 SAT2Q96F10 170 aaPredicted RBP11.23□□□□□ -0.61
VIM-208ENST00000497849 TRAV8-2A0A0B4J237 113 aa11.22□□□□□ -0.61
VIM-208ENST00000497849 SIVA1O15304 175 aa11.22□□□□□ -0.61
VIM-208ENST00000497849 NMBP08949 121 aa11.22□□□□□ -0.61
VIM-208ENST00000497849 ZNF493Q6ZR52 646 aa11.22□□□□□ -0.61
VIM-208ENST00000497849 A0A096LPF7 62 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 H3BTX0 84 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 GALR1P47211 349 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 FAM122CQ6P4D5 195 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 RNF182Q8N6D2 247 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 OR10G4Q8NGN3 311 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 OR10G9Q8NGN4 311 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 OR10G7Q8NGN6 311 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 TMEM263Q8WUH6 116 aaKnown RBP11.21□□□□□ -0.61
VIM-208ENST00000497849 PFDN5Q99471 154 aa11.21□□□□□ -0.61
VIM-208ENST00000497849 FAT3Q8TDW7 4589 aa11.2□□□□□ -0.62
VIM-208ENST00000497849 FHITP49789 147 aa11.2□□□□□ -0.62
VIM-208ENST00000497849 SYT8Q8NBV8 401 aa11.2□□□□□ -0.62
VIM-208ENST00000497849 VSIG2Q96IQ7 327 aa11.2□□□□□ -0.62
VIM-208ENST00000497849 ACTR3CQ9C0K3 210 aaPredicted RBP11.2□□□□□ -0.62
VIM-208ENST00000497849 GAGE12BA1L429 117 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 MRPS12O15235 138 aaKnown RBP11.19□□□□□ -0.62
VIM-208ENST00000497849 HMGB3O15347 200 aaKnown RBP11.19□□□□□ -0.62
VIM-208ENST00000497849 GAGE7O76087 117 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 GAGE12FP0CL80 117 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 GAGE12GP0CL81 117 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 GAGE12IP0CL82 117 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 FAM167A-AS1Q96KT0 104 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 SLC25A2Q9BXI2 301 aa11.19□□□□□ -0.62
VIM-208ENST00000497849 A0A1W2PPV4 95 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 H2AFB1P0C5Y9 115 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 PYYP10082 97 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 PRB4P10163 310 aaPredicted RBP11.18□□□□□ -0.62
VIM-208ENST00000497849 NDUFA5Q16718 116 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 TMEM70Q9BUB7 260 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 FUT9Q9Y231 359 aa11.18□□□□□ -0.62
VIM-208ENST00000497849 CTXND1A0A1B0GTU2 59 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 H3BQ15 152 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 TEX46H3BTG2 121 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 NXPH4O95158 308 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 RPL7P18124 248 aaKnown RBP11.17□□□□□ -0.62
VIM-208ENST00000497849 S100A7P31151 101 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 CDC34P49427 236 aaPredicted RBP11.17□□□□□ -0.62
VIM-208ENST00000497849 RHOBP62745 196 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 HIST1H1AQ02539 215 aaPredicted RBP11.17□□□□□ -0.62
VIM-208ENST00000497849 S100A7AQ86SG5 101 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 NFE4Q86UQ8 179 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 TMPRSS5Q9H3S3 457 aa11.17□□□□□ -0.62
VIM-208ENST00000497849 LINC00862A6NCI5 91 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 ZNF726P1Q15940 193 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 BPIFA4PQ86YQ2 179 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 ZNF738Q8NE65 137 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 OR8A1Q8NGG7 326 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 SFT2D1Q8WV19 159 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 MBD3L1Q8WWY6 194 aa11.16□□□□□ -0.62
VIM-208ENST00000497849 TRAV1-1A0A0B4J248 108 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 MAP1LC3B2A6NCE7 125 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 H7BYZ3 331 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 KIR3DS1Q14943 382 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 LCN15Q6UWW0 184 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 LYPD6BQ8NI32 183 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 RAB24Q969Q5 203 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 GPR82Q96P67 336 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 MRPL32Q9BYC8 188 aaKnown RBP11.15□□□□□ -0.62
VIM-208ENST00000497849 MAP1LC3BQ9GZQ8 125 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 FAM30AQ9NZY2 134 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 PLA2G2DQ9UNK4 145 aa11.15□□□□□ -0.62
VIM-208ENST00000497849 OR10J4P0C629 311 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 IGLC2P0DOY2 106 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 CDKN1BP46527 198 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 BLNKQ8WV28 456 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 PAXXQ9BUH6 204 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 OR51M1Q9H341 326 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 MED9Q9NWA0 146 aa11.14□□□□□ -0.63
VIM-208ENST00000497849 A0A1B0GV50 99 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 SLC17A3O00476 420 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 OR7C2O60412 319 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 COMMD7Q86VX2 200 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 DEFB104AQ8WTQ1 72 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 FXYD5Q96DB9 178 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 PPP1R14DQ9NXH3 145 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 TMEM14CQ9P0S9 112 aa11.13□□□□□ -0.63
VIM-208ENST00000497849 A0A087X0K7 114 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms