RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 CFAP46Q8IYW2 2715 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 A6NJY4 79 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 NPSP0C0P6 89 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 LINC01559Q495D7 138 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 Q6ZVH6 145 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 RNF185Q96GF1 192 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 SMAD7O15105 426 aaKnown RBP8.58□□□□□ -1.04
CHMP3-209ENST00000494623 CIDEAO60543 219 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 SLC25A34Q6PIV7 304 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 Q6ZS46 218 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 LCNL1Q6ZST4 164 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 PSMG3-AS1Q96PY0 264 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 KLK15Q9H2R5 256 aa8.58□□□□□ -1.04
CHMP3-209ENST00000494623 J3KRW8 73 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 PF4V1P10720 104 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 WFDC3Q8IUB2 231 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 SELENOKQ9Y6D0 94 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 EVI2AP22794 236 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 HIST1H1AQ02539 215 aaPredicted RBP8.57□□□□□ -1.04
CHMP3-209ENST00000494623 FOXE3Q13461 319 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 ZNF738Q8NE65 137 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 C20orf173Q96LM9 149 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 SCRT2Q9NQ03 307 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 PIEZO1Q92508 2521 aa8.57□□□□□ -1.04
CHMP3-209ENST00000494623 NDUFS8O00217 210 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 TCF21O43680 179 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 IGF1P05019 195 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 RPL11P62913 178 aaKnown RBP8.56□□□□□ -1.04
CHMP3-209ENST00000494623 GLMPQ8WWB7 406 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 CNFNQ9BYD5 112 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 IGKV3-7A0A075B6H7 116 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 HBDP02042 147 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 MSMBP08118 114 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 GATA1P15976 413 aaPredicted RBP8.56□□□□□ -1.04
CHMP3-209ENST00000494623 CRIP2P52943 208 aaPredicted RBP8.56□□□□□ -1.04
CHMP3-209ENST00000494623 MPV17L2Q567V2 206 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 C9orf47Q6ZRZ4 202 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 NRGNQ92686 78 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 MRPL53Q96EL3 112 aaKnown RBP8.56□□□□□ -1.04
CHMP3-209ENST00000494623 MS4A6AQ9H2W1 248 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 FLNCQ14315 2725 aa8.56□□□□□ -1.04
CHMP3-209ENST00000494623 A6NDX4 124 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 SNAI2O43623 268 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 IGHG2P01859 326 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 DEFB1P60022 68 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 GAGE1Q13065 139 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 MAP1LC3AQ9H492 121 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 HIF1ANQ9NWT6 349 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 TNFRSF6BO95407 300 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 NUDT3O95989 172 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 AVPP01185 164 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 TCTAP57738 103 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 CACNG7P62955 275 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 OR4X2Q8NGF9 303 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 ATP6V0BQ99437 205 aa8.55□□□□□ -1.04
CHMP3-209ENST00000494623 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.54□□□□□ -1.044e-7■■■■□ 26.6
CHMP3-209ENST00000494623 NDUFA4O00483 81 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 C18orf15Q96N68 181 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 CELSR2Q9HCU4 2923 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 PPBPP02775 128 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 RBX1P62877 108 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 USMG5Q96IX5 58 aa8.54□□□□□ -1.04
CHMP3-209ENST00000494623 UTP20O75691 2785 aaKnown RBP8.54□□□□□ -1.04
CHMP3-209ENST00000494623 PRR9Q5T870 116 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 C9orf139Q6ZV77 190 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 GPHB5Q86YW7 130 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 IFI27L1Q96BM0 104 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 NPFFR1Q9GZQ6 430 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 UFC1Q9Y3C8 167 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 CRYBG3Q68DQ2 2970 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 IGHV7-4-1A0A0J9YVY3 117 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 LEPP41159 167 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 SPANXN1Q5VSR9 72 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 IGSF10Q6WRI0 2623 aa8.53□□□□□ -1.04
CHMP3-209ENST00000494623 SPRY2O43597 315 aa8.52□□□□□ -1.04
CHMP3-209ENST00000494623 TMEM95Q3KNT9 176 aa8.52□□□□□ -1.04
CHMP3-209ENST00000494623 TM4SF20Q53R12 229 aa8.52□□□□□ -1.04
CHMP3-209ENST00000494623 SMIM15Q7Z3B0 74 aa8.52□□□□□ -1.04
CHMP3-209ENST00000494623 USP9XQ93008 2570 aaPredicted RBP8.52□□□□□ -1.05
CHMP3-209ENST00000494623 TRAV26-2A0A0B4J265 109 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 LGALS9BQ3B8N2 356 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 LGALS9CQ6DKI2 356 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 OR10J6PQ8NGY7 276 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 B4DSR2 109 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 F6UB75 175 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 H3BVH4 76 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 COX8AP10176 69 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 SRD5A1P18405 259 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 LINC00477Q96M19 166 aa8.52□□□□□ -1.05
CHMP3-209ENST00000494623 H3BUA1 57 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 BVES-AS1Q5T3Y7 98 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 OR2K2Q8NGT1 345 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 RHPN1-AS1Q9BWJ2 59 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 COX11Q9Y6N1 276 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 DOPEY1Q5JWR5 2465 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 OVOL1O14753 267 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 ORAOV1Q8WV07 137 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 NXT2Q9NPJ8 142 aaKnown RBP8.51□□□□□ -1.05
CHMP3-209ENST00000494623 DKK2Q9UBU2 259 aa8.51□□□□□ -1.05
CHMP3-209ENST00000494623 CSPG4Q6UVK1 2322 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms