RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 BCL2L10Q9HD36 194 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CMC2Q9NRP2 79 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 RPRMQ9NS64 109 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 C1orf123Q9NWV4 160 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 SIGLEC8Q9NYZ4 499 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 GNG13Q9P2W3 67 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CKLFQ9UBR5 152 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 CES1P1Q9UKY3 287 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TP53TG1Q9Y2A0 90 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 F11RQ9Y624 299 aaKnown RBP1.46□□□□□ -2.18
HMGB1-208ENST00000490788 MYO7BQ6PIF6 2116 aa1.46□□□□□ -2.18
HMGB1-208ENST00000490788 TRRAPQ9Y4A5 3859 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CNTRLQ7Z7A1 2325 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 DSPPQ9NZW4 1301 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 YLPM1P49750 1951 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ANK3Q12955 4377 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TDRD6O60522 2096 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TMED7-TICAM2A0A0A6YYA0 188 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV4A0A0B4J268 109 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 DAPL1A0PJW8 107 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 LRRC30A6NM36 301 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 RIIAD1A6NNX1 92 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CEACAM18A8MTB9 384 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CEBPZOSA8MTT3 80 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 GGTLC3B5MD39 225 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM262E9PQX1 116 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 H3BTX0 84 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 J3QLW9 94 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 K7ERJ3 54 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ANGPTL7O43827 346 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 SNCGO76070 127 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TNFP01375 233 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 IGHV3-23P01764 117 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 IGHV3-7P01780 117 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 HLA-DRB1P01911 266 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 HBE1P02100 147 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 GYPAP02724 150 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 RBP4P02753 201 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 SCTP09683 121 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TACSTD2P09758 323 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 H2BFMP0C1H6 154 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF688P0C7X2 276 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CECR9P0C854 216 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF32P17041 273 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PRDX3P30048 256 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 S100A3P33764 101 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CSN1S1P47710 185 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TAS2R45P59539 299 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PPP1CBP62140 327 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 UBE2G1P62253 170 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 RPS14P62263 151 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 SNRPFP62306 86 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 RPL23P62829 140 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 LAMTOR4Q0VGL1 99 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 FAM53BQ14153 422 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PRR4Q16378 134 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CEACAM16Q2WEN9 425 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 Q499Y3 187 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM52BQ4KMG9 183 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 KLF17Q5JT82 389 aaPredicted RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CASC10Q5T4H9 136 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TEX36Q5VZQ5 186 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 IGFL2Q6UWQ7 119 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 Q6ZQT7 251 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 DNM1P46Q6ZS02 220 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 Q6ZS92 163 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 C2orf91Q6ZV80 131 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 HSD11B1LQ7Z5J1 315 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM150AQ86TG1 271 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 APRG1Q8IVJ8 170 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PIANPQ8IYJ0 282 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 LINC01561Q8N1V8 128 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 GAPTQ8N292 157 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 FAM19A2Q8N3H0 131 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 C3orf22Q8N5N4 141 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 WDR31Q8NA23 367 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 LINC01555Q8NAE3 123 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF740Q8NDX6 193 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 OR4X2Q8NGF9 303 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 OR8B3Q8NGG8 313 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 OR1F12Q8NHA8 337 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ATP6V0E2Q8NHE4 81 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 OTOSQ8NHW6 89 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 STAG3L4Q8TBR4 150 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF721Q8TF20 911 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 C2orf15Q8WU43 125 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PPDPFLQ8WWR9 84 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 PGLYRP3Q96LB9 341 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 C2orf50Q96LR7 162 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 OR8B2Q96RD0 313 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 MCHR1Q99705 422 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 CCL19Q99731 98 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 SMIM7Q9BQ49 75 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 FBXL15Q9H469 300 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 GLIPR2Q9H4G4 154 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 NAA60Q9H7X0 242 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF331Q9NQX6 463 aaPredicted RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 GNG12Q9UBI6 72 aa1.45□□□□□ -2.18
HMGB1-208ENST00000490788 LSM7Q9UK45 103 aaKnown RBP1.45□□□□□ -2.18
HMGB1-208ENST00000490788 MPC1Q9Y5U8 109 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms