RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 BPIFA4PQ86YQ2 179 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 C11orf72Q8NBR9 251 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 LRRC20Q8TCA0 184 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 MITD1Q8WV92 249 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 FAM19A4Q96LR4 140 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 SDHCQ99643 169 aaPredicted RBP4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 MGST2Q99735 147 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 LINC00467Q9BRT7 94 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 PARD6GQ9BYG4 376 aaPredicted RBP4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 C11orf1Q9H5F2 150 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 DNAJC4Q9NNZ3 241 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 SCRT2Q9NQ03 307 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 PPP1R14DQ9NXH3 145 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 RCL1Q9Y2P8 373 aaKnown RBP4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 PXMP4Q9Y6I8 212 aa4.35□□□□□ -1.71
PRPF40A-210ENST00000489741 SRRM2Q9UQ35 2752 aaKnown RBP4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 A0A096LPF7 62 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 GOSR2O14653 212 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 ZNF253O75346 499 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 SNRPCP09234 159 aaKnown RBP4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 GUK1Q16774 197 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 IAH1Q2TAA2 248 aaPredicted RBP4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 Q6ZTI0 123 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 SMIM29Q86T20 159 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 PYGO2Q9BRQ0 406 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 MYCBP2O75592 4640 aa4.34□□□□□ -1.71
PRPF40A-210ENST00000489741 DMBT1Q9UGM3 2413 aaPredicted RBP4.34□□□□□ -1.72
PRPF40A-210ENST00000489741 TRBV19A0A075B6N1 114 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 TRAV5A0A0B4J249 113 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 TRAV12-3A0A0B4J271 114 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 KLLNB2CW77 178 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 H3BTX0 84 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 COX7A2P2O60397 106 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 NOL3O60936 208 aaKnown RBP4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 RLN2P04090 185 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 S100A5P33763 92 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 LEPP41159 167 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 SEC61BP60468 96 aaKnown RBP4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 IL15RAQ13261 267 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 VWC2Q2TAL6 325 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 C10orf113Q5VZT2 155 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 MRPL53Q96EL3 112 aaKnown RBP4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 ZNF586Q9NXT0 402 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 GSKIPQ9P0R6 139 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 WDR83OSQ9Y284 106 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 VPS13BQ7Z7G8 4022 aa4.33□□□□□ -1.72
PRPF40A-210ENST00000489741 C7orf71A4D174 169 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 SNURFLB1AK76 121 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 PLA2G10O15496 165 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 SPINK4O60575 86 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 SLC25A5P05141 298 aaKnown RBP4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 NMBP08949 121 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 CRISP2P16562 243 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 RPL29P47914 159 aaKnown RBP4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 CAMLGP49069 296 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 XGP55808 180 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 LINC00315P59091 139 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 CD300CQ08708 224 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 ERCC8Q13216 396 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 CNPY1Q3B7I2 92 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 SPANXN2Q5MJ10 180 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 MIC13Q5XKP0 118 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 NRARPQ7Z6K4 114 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 OR1L4Q8NGR5 311 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 LINC00477Q96M19 166 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 AGPAT4-IT1Q9H0P7 198 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 GSN-AS1Q9NRJ2 163 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 TMEM14CQ9P0S9 112 aa4.32□□□□□ -1.72
PRPF40A-210ENST00000489741 FAM24AA6NFZ4 105 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 GAGE10A6NGK3 116 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 J3KRW8 73 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 M0R3E3 92 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 SIVA1O15304 175 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 CST7O76096 145 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 HIST1H1EP10412 219 aaKnown RBP4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 TCL1AP56279 114 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 RAB31Q13636 194 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 PDE6HQ13956 83 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 IBA57Q5T440 356 aaKnown RBP4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 KRTAP5-11Q6L8G4 156 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 Q6ZQT7 251 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 Q6ZRG5 221 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 LYPD1Q8N2G4 141 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 ZFAND2AQ8N6M9 145 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 ZNF680Q8NEM1 530 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 PFDN5Q99471 154 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 SLC39A9Q9NUM3 307 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 UQCC1Q9NVA1 299 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 PRELID1Q9Y255 219 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 KLF12Q9Y4X4 402 aa4.31□□□□□ -1.72
PRPF40A-210ENST00000489741 TRGV2A0A075B6R0 118 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 TRGV1A0A0A0MS02 117 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 TRBV7-9A0A0J9YWB2 115 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 CENPXA8MT69 81 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 CCSO14618 274 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 MPDU1O75352 247 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 S100A11P31949 105 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 CRYBA4P53673 196 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 BTN1A1Q13410 526 aa4.3□□□□□ -1.72
PRPF40A-210ENST00000489741 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms