RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 ATP5G1P05496 136 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 SPINK8P0C7L1 97 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TRGC1P0CF51 173 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 SLC25A6P12236 298 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 AGTR1P30556 359 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR10J1P30954 320 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 INSL3P51460 131 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 FOXA3P55318 350 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 TCTAP57738 103 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 DEFA1P59665 94 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 GABARAPL2P60520 117 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C1QTNF8P60827 252 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 RAB8AP61006 207 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 UBA52P62987 128 aaKnown RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF117Q03924 483 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 AKR1C1Q04828 323 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 KLRD1Q13241 179 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 EIF3IQ13347 325 aaKnown RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 PMAIP1Q13794 54 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ELOBQ15370 118 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 IQCJQ1A5X6 159 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 BVES-AS1Q5T3Y7 98 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 IBA57Q5T440 356 aaKnown RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 BCL2L15Q5TBC7 163 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 Q6Q795 121 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 RASL11AQ6T310 242 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF705AQ6ZN79 300 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 TMEM91Q6ZNR0 172 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 GOLT1AQ6ZVE7 132 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 SLC25A26Q70HW3 274 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 FP248Q71RG6 208 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF550Q7Z398 422 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 VN1R4Q7Z5H5 301 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 FAM24BQ8N5W8 94 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 LINC00311Q8N616 119 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 DEFB125Q8N687 156 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C3orf56Q8N813 242 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TMEM229BQ8NBD8 167 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF439Q8NDP4 499 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR11H6Q8NGC7 330 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR8B12Q8NGG6 310 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR51A4Q8NGJ6 313 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR51A2Q8NGJ7 313 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR51T1Q8NGJ9 327 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR5AK2Q8NH90 309 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 OTOSQ8NHW6 89 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 MCFD2Q8NI22 146 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 SLC25A40Q8TBP6 338 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF675Q8TD23 568 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 CT55Q8WUE5 264 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ADAT3Q96EY9 351 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 DPH3Q96FX2 82 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ACY3Q96HD9 319 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF625Q96I27 306 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 CIB3Q96Q77 187 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR4C12Q96R67 309 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 LYSMD1Q96S90 227 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 C20orf78Q9BR46 151 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 ZNF471Q9BX82 626 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 GNB1LQ9BYB4 327 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 MRPL32Q9BYC8 188 aaKnown RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 OR2H1Q9GZK4 316 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 SH3BGRL3Q9H299 93 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 Q9H521 79 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 RPRMQ9NS64 109 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 LYRM2Q9NU23 88 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 TAS2R8Q9NYW2 309 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TAAR3PQ9P1P4 343 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TP73-AS1Q9UF72 201 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 HHLA3Q9XRX5 114 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 AMMECR1Q9Y4X0 333 aaPredicted RBP0.67□□□□□ -2.3
SMC4-220ENST00000488017 IER3IP1Q9Y5U9 82 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 NHSQ6T4R5 1651 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 HEATR5BQ9P2D3 2071 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 PLIN4Q96Q06 1357 aa0.67□□□□□ -2.3
SMC4-220ENST00000488017 TNRC6BQ9UPQ9 1833 aaKnown RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 BPTFQ12830 3046 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 KCPQ6ZWJ8 1503 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRGV10A0A0A0MS01 117 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRAV14DV4A0A0A6YYC5 116 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 BORCS7-ASMTA0A0B4J1R7 106 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 IGKV1D-43A0A0B4J1Z2 117 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRAV1-1A0A0B4J248 108 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRAV4A0A0B4J268 109 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 MUC21A0A140T8X8 626 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRDV1A0A1B0GX56 115 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 C19orf71A6NCJ1 209 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TMEM235A6NFC5 223 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 GGT3PA6NGU5 568 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 ZNF860A6NHJ4 632 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 HMSDA8MTL9 139 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OOSP1A8MZH6 123 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 H7C1C5 153 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 M0R129 80 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 M0R2P5 195 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 GEMIN2O14893 280 aaKnown RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 RER1O15258 196 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CRXO43186 299 aaPredicted RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 HCRTO43612 131 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SFT2D2O95562 160 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms