RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 HIST1H4GQ99525 98 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 PGPEP1Q9NXJ5 209 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 MRPL35Q9NZE8 188 aaKnown RBP10.33□□□□□ -0.76
USP40-214ENST00000483519 PLNP26678 52 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 ETDBQ3ZM63 59 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 ZNF575Q86XF7 245 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 ARPC1AQ92747 370 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 LY6LH3BQJ8 138 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 TIMM23O14925 209 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 DTX2Q86UW9 622 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 FAM57AQ8TBR7 257 aa10.32□□□□□ -0.76
USP40-214ENST00000483519 SPAG8Q99932 426 aaPredicted RBP10.32□□□□□ -0.76
USP40-214ENST00000483519 SPTA1P02549 2419 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 IGLV11-55A0A075B6I3 123 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 IGLV2-18A0A075B6J9 118 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 LAGE3Q14657 143 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 RRN3P1Q2M238 152 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 C21orf62Q9NYP8 219 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 A0A087WX48 190 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 CCDC144NLQ6NUI1 221 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 SH2D6Q7Z4S9 175 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 MAPKAPK5-AS1Q8N8E1 139 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 Q8NA96 180 aa10.31□□□□□ -0.76
USP40-214ENST00000483519 K7EMI3 77 aa10.3□□□□□ -0.76
USP40-214ENST00000483519 GATA1P15976 413 aaPredicted RBP10.3□□□□□ -0.76
USP40-214ENST00000483519 TLN1Q9Y490 2541 aaKnown RBP10.3□□□□□ -0.76
USP40-214ENST00000483519 SPENQ96T58 3664 aaKnown RBP10.3□□□□□ -0.76
USP40-214ENST00000483519 LINC01619G3V211 115 aa10.3□□□□□ -0.76
USP40-214ENST00000483519 FANCD2OSQ96PS1 177 aa10.3□□□□□ -0.76
USP40-214ENST00000483519 F8W735 103 aaPredicted RBP10.29□□□□□ -0.76
USP40-214ENST00000483519 NPBQ8NG41 125 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 PSMG3-AS1Q96PY0 264 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 COL6A6A6NMZ7 2263 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 NDUFA3O95167 84 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 IGHG4P01861 327 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 ATP5J2P56134 94 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 TCTEX1D4Q5JR98 221 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 AMTNQ6UX39 209 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 IGFBPL1Q8WX77 278 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 SMAD5-AS1Q9Y6J3 95 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 LOC400499M0QZD8 3231 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 PIEZO2Q9H5I5 2752 aa10.29□□□□□ -0.76
USP40-214ENST00000483519 KMT2BQ9UMN6 2715 aaPredicted RBP10.28□□□□□ -0.76
USP40-214ENST00000483519 A0A1B0GWB2 263 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 HLA-DMBP28068 263 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 SCGB2A2Q13296 93 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 IGFL4Q6B9Z1 124 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 PRO0461Q9UI25 63 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 TRBV7-3A0A075B6L6 115 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 A0A0G2JNJ9 132 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 PPIFP30405 207 aaKnown RBP10.28□□□□□ -0.76
USP40-214ENST00000483519 IL17RELQ6ZVW7 336 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 DYNAPQ8N1N2 210 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 Q9UFV3 132 aa10.28□□□□□ -0.76
USP40-214ENST00000483519 RBAKDNA6NC62 111 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 OR11H12B2RN74 326 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.27□□□□□ -0.76
USP40-214ENST00000483519 OR11H1Q8NG94 326 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 OR11H2Q8NH07 326 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 BBC3Q96PG8 261 aaPredicted RBP10.27□□□□□ -0.76
USP40-214ENST00000483519 MGAQ8IWI9 3026 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 FAM208BQ5VWN6 2430 aa10.27□□□□□ -0.76
USP40-214ENST00000483519 ZGRF1Q86YA3 2104 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 CKS1BP61024 79 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 C5orf64Q2M2E5 130 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 ONECUT1Q9UBC0 465 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 ZFHX4Q86UP3 3567 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 TRAV12-1A0A0B4J245 112 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 MYMXA0A1B0GTQ4 84 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 F8VRH5 84 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 H7C1H1 209 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 PRRG2O14669 202 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 RAB9AP51151 201 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 ERCC8Q13216 396 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 ZNF672Q499Z4 452 aaPredicted RBP10.27□□□□□ -0.77
USP40-214ENST00000483519 NRACQ8N912 160 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 DPM3Q9P2X0 92 aa10.27□□□□□ -0.77
USP40-214ENST00000483519 ATRXP46100 2492 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 F8WDY8 70 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 APOMO95445 188 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 TRGV3P03979 118 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 HES1Q14469 280 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 ASPMQ8IZT6 3477 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 E7EQL1 145 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 IGHV3-23P01764 117 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 ZNF843Q8N446 348 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 C1orf43Q9BWL3 253 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 UFC1Q9Y3C8 167 aa10.26□□□□□ -0.77
USP40-214ENST00000483519 MTURNQ8N3F0 131 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 ATP6V0E2Q8NHE4 81 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 MRAP2Q96G30 205 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 IGKV3D-20A0A0C4DH25 116 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 HOXA3O43365 443 aaPredicted RBP10.25□□□□□ -0.77
USP40-214ENST00000483519 CTSGP08311 255 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 ID1P41134 155 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 ROS1P08922 2347 aa10.25□□□□□ -0.77
USP40-214ENST00000483519 ITPR1Q14643 2758 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 SLC50A1Q9BRV3 221 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 C1QTNF4Q9BXJ3 329 aa10.24□□□□□ -0.77
USP40-214ENST00000483519 TRAV26-2A0A0B4J265 109 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms