RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 DEFB109BQ30KR1 87 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 ZFP2Q6ZN57 461 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 ZNF48Q96MX3 618 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 DYNLRB1Q9NP97 96 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 XGP55808 180 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 CFHR4Q92496 578 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 DLX4Q92988 240 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 H3BVH4 76 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 GATA3P23771 443 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 SMCPP49901 116 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 DYNAPQ8N1N2 210 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 RNF182Q8N6D2 247 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 PRAC2D3DTV9 90 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 TIMM23O14925 209 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 HLA-DRB4P13762 266 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 PLNP26678 52 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 FHL3Q13643 280 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 IL17RELQ6ZVW7 336 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 VKORC1Q9BQB6 163 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 HLA-DRB4X5D2U9 266 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 RNF183Q96D59 192 aa14.56□□□□□ -0.08
CCDC88B-207ENST00000479965 IGHV3OR16-13A0A075B7E8 117 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 IGHV3-74A0A0B4J1X5 117 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 IGHV3-66A0A0C4DH42 116 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 LINC01548A6NM66 108 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 LYNX1G3V0Z9 82 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 IGLV1-47P01700 117 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 THBDP07204 575 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 LYNX1P0DP58 116 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 MFAP4P55083 255 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 BSPH1Q075Z2 132 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 RAXQ9Y2V3 346 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 CACNA1HO95180 2353 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 CFAP126Q5VTH2 177 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 ASCL5Q7RTU5 278 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 IGLV2-18A0A075B6J9 118 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 Q6ZUT4 128 aa14.55□□□□□ -0.08
CCDC88B-207ENST00000479965 KLRD1Q13241 179 aa14.54□□□□□ -0.08
CCDC88B-207ENST00000479965 RAB1BQ9H0U4 201 aa14.54□□□□□ -0.08
CCDC88B-207ENST00000479965 ONECUT1Q9UBC0 465 aa14.54□□□□□ -0.08
CCDC88B-207ENST00000479965 LINC01559Q495D7 138 aa14.54□□□□□ -0.08
CCDC88B-207ENST00000479965 SPANXN1Q5VSR9 72 aa14.54□□□□□ -0.08
CCDC88B-207ENST00000479965 F8VRH5 84 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 H7C1H1 209 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 SS18L2Q9UHA2 77 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 LINC01546A6NGU7 62 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 ZNF815PA8K554 130 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 SPRY2O43597 315 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 ZNF883P0CG24 379 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 TMEM78Q5T7P6 136 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 SCGB3A1Q96QR1 104 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 SMAD5-AS1Q9Y6J3 95 aa14.53□□□□□ -0.08
CCDC88B-207ENST00000479965 LGALS1P09382 135 aaKnown RBP14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 C21orf62Q9NYP8 219 aa14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 J3KRW8 73 aa14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 IGHG4P01861 327 aa14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 NUP37Q8NFH4 326 aa14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 DEFB104AQ8WTQ1 72 aa14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 EP300Q09472 2414 aaPredicted RBP14.52□□□□□ -0.08
CCDC88B-207ENST00000479965 IGKV3D-20A0A0C4DH25 116 aa14.52□□□□□ -0.09
CCDC88B-207ENST00000479965 TMEM190Q8WZ59 177 aa14.52□□□□□ -0.09
CCDC88B-207ENST00000479965 Q6ZQT7 251 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 PRADC1Q9BSG0 188 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 CNFNQ9BYD5 112 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 RALYQ9UKM9 306 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 PRSS29PA6NIE9 313 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 ANAPC13Q9BS18 74 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 C11orf21Q9P2W6 132 aa14.51□□□□□ -0.09
CCDC88B-207ENST00000479965 CDX4O14627 284 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 C3orf36Q3SXR2 165 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 NRACQ8N912 160 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 KLHL30-AS1Q8NEE0 82 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 A6NJY4 79 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 TSPAN13O95857 204 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 COX8CQ7Z4L0 72 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 PLEKHB2Q96CS7 222 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 FANCD2OSQ96PS1 177 aa14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 SRSF8Q9BRL6 282 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-207ENST00000479965 IGHV3-49A0A0A0MS15 119 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 TNFRSF13BO14836 293 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 NBR2O15453 112 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 KIR2DL4Q99706 377 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 ARHGAP32A7KAX9 2087 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 SLC25A16P16260 332 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 EMP1P54849 157 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 RNASE6Q93091 150 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 HIF1ANQ9NWT6 349 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 MED13LQ71F56 2210 aa14.49□□□□□ -0.09
CCDC88B-207ENST00000479965 SCGB1C2P0DMR2 95 aa14.48□□□□□ -0.09
CCDC88B-207ENST00000479965 F8W735 103 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-207ENST00000479965 CARD19Q96LW7 228 aa14.48□□□□□ -0.09
CCDC88B-207ENST00000479965 SVEP1Q4LDE5 3571 aa14.47□□□□□ -0.09
CCDC88B-207ENST00000479965 ANXA2RQ3ZCQ2 193 aa14.47□□□□□ -0.09
CCDC88B-207ENST00000479965 PPDPFLQ8WWR9 84 aa14.47□□□□□ -0.09
CCDC88B-207ENST00000479965 IGFL2Q6UWQ7 119 aa14.46□□□□□ -0.09
CCDC88B-207ENST00000479965 ATP6V0E2Q8NHE4 81 aa14.46□□□□□ -0.09
CCDC88B-207ENST00000479965 KAAG1Q9UBP8 84 aa14.46□□□□□ -0.09
CCDC88B-207ENST00000479965 M0R381 172 aa14.46□□□□□ -0.1
CCDC88B-207ENST00000479965 SMIM2Q9BVW6 85 aa14.45□□□□□ -0.1
CCDC88B-207ENST00000479965 ERG28Q9UKR5 140 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms