RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 UBE2L3P68036 154 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-206ENST00000473405 ST6GAL2Q96JF0 529 aa12.94□□□□□ -0.34
CCDC88B-206ENST00000473405 KRTAP4-5Q9BYR2 181 aa12.94□□□□□ -0.34
CCDC88B-206ENST00000473405 MRPL16Q9NX20 251 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-206ENST00000473405 HSPB11Q9Y547 144 aa12.94□□□□□ -0.34
CCDC88B-206ENST00000473405 A0A1W2PPQ1 181 aa12.93□□□□□ -0.34
CCDC88B-206ENST00000473405 DEFA1P59665 94 aa12.93□□□□□ -0.34
CCDC88B-206ENST00000473405 DEFA3P59666 94 aa12.93□□□□□ -0.34
CCDC88B-206ENST00000473405 RANP62826 216 aaKnown RBP12.93□□□□□ -0.34
CCDC88B-206ENST00000473405 FFAR4Q5NUL3 377 aa12.93□□□□□ -0.34
CCDC88B-206ENST00000473405 RBAKDNA6NC62 111 aa12.92□□□□□ -0.34
CCDC88B-206ENST00000473405 PTTG1O95997 202 aa12.92□□□□□ -0.34
CCDC88B-206ENST00000473405 ZNF266Q14584 549 aa12.92□□□□□ -0.34
CCDC88B-206ENST00000473405 LYPD1Q8N2G4 141 aa12.92□□□□□ -0.34
CCDC88B-206ENST00000473405 SSNA1O43805 119 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 CDK2AP2O75956 126 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 IGHV3-53P01767 116 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 PET100P0DJ07 73 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 KHDC3LQ587J8 217 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 ARPC5LQ9BPX5 153 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 SMIM3Q9BZL3 60 aa12.91□□□□□ -0.34
CCDC88B-206ENST00000473405 EIF3GO75821 320 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC88B-206ENST00000473405 RPL12P30050 165 aaKnown RBP12.9□□□□□ -0.34
CCDC88B-206ENST00000473405 CSN1S1P47710 185 aa12.9□□□□□ -0.34
CCDC88B-206ENST00000473405 MBD2Q9UBB5 411 aa12.9□□□□□ -0.34
CCDC88B-206ENST00000473405 DIRC3C9JPN6 131 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 PAX4O43316 350 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 ZNF415Q09FC8 603 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 RGS21Q2M5E4 152 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 MUC21Q5SSG8 566 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 Q6AWC8 147 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 SPATA12Q7Z6I5 190 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 WFDC1Q9HC57 220 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 MDFICQ9P1T7 246 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 ICOSQ9Y6W8 199 aa12.89□□□□□ -0.35
CCDC88B-206ENST00000473405 IFNA5P01569 189 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 BTF3P20290 206 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 CRYBA4P53673 196 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 LINC00315P59091 139 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 TAS2R45P59539 299 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 FHL2Q14192 279 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 PRO0255Q9UI72 69 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 LENEPQ9Y5L5 61 aa12.88□□□□□ -0.35
CCDC88B-206ENST00000473405 KRTAP10-2P60368 255 aa12.87□□□□□ -0.35
CCDC88B-206ENST00000473405 Q6ZRN7 208 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-206ENST00000473405 SCGB1C1Q8TD33 95 aa12.87□□□□□ -0.35
CCDC88B-206ENST00000473405 C8orf49Q96NF6 230 aa12.87□□□□□ -0.35
CCDC88B-206ENST00000473405 SIVA1O15304 175 aa12.86□□□□□ -0.35
CCDC88B-206ENST00000473405 NXPH4O95158 308 aa12.86□□□□□ -0.35
CCDC88B-206ENST00000473405 TMED6Q8WW62 240 aa12.86□□□□□ -0.35
CCDC88B-206ENST00000473405 HYLS1Q96M11 299 aa12.86□□□□□ -0.35
CCDC88B-206ENST00000473405 HHLA3Q9XRX5 114 aa12.86□□□□□ -0.35
CCDC88B-206ENST00000473405 TMEM183BQ1AE95 376 aa12.85□□□□□ -0.35
CCDC88B-206ENST00000473405 TMEM183AQ8IXX5 376 aa12.85□□□□□ -0.35
CCDC88B-206ENST00000473405 OTORQ9NRC9 128 aa12.85□□□□□ -0.35
CCDC88B-206ENST00000473405 SFTA3P0C7M3 94 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 RAB2AP61019 212 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 SLAQ13239 276 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 TDRG1Q3Y452 100 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 OR10G4Q8NGN3 311 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 RASL10AQ92737 203 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 ZNF479Q96JC4 524 aa12.84□□□□□ -0.35
CCDC88B-206ENST00000473405 PGPA6NDG6 321 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 ACOT6Q3I5F7 207 aaPredicted RBP12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 LYPD5Q6UWN5 251 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 FAM159AQ6UWV7 190 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 PQLC2Q6ZP29 291 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 GOLT1AQ6ZVE7 132 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 IQCF2Q8IXL9 164 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 MAPKAPK5-AS1Q8N8E1 139 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 TVP23CQ96ET8 276 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 RPH3ALQ9UNE2 315 aa12.83□□□□□ -0.36
CCDC88B-206ENST00000473405 TRGV11A0A075B6L2 103 aa12.82□□□□□ -0.36
CCDC88B-206ENST00000473405 TRAV8-1A0A0A6YYK1 113 aa12.82□□□□□ -0.36
CCDC88B-206ENST00000473405 MRPL23Q16540 153 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-206ENST00000473405 SPXQ9BT56 116 aa12.82□□□□□ -0.36
CCDC88B-206ENST00000473405 NAGKQ9UJ70 344 aa12.82□□□□□ -0.36
CCDC88B-206ENST00000473405 TRGV4A0A0C4DH28 118 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 K7EQD1 137 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 HMGB3O15347 200 aaKnown RBP12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 GNG5P63218 68 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 NEGR1Q7Z3B1 354 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 CMTM2Q8TAZ6 248 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 ALG5Q9Y673 324 aa12.81□□□□□ -0.36
CCDC88B-206ENST00000473405 A0A1W2PPV4 95 aa12.8□□□□□ -0.36
CCDC88B-206ENST00000473405 F6UZH7 168 aa12.8□□□□□ -0.36
CCDC88B-206ENST00000473405 FAM74A1Q5RGS3 127 aa12.8□□□□□ -0.36
CCDC88B-206ENST00000473405 ARL6IP6Q8N6S5 226 aa12.8□□□□□ -0.36
CCDC88B-206ENST00000473405 IGHV3-16A0A0C4DH30 117 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 GNRH2O43555 120 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 ARL14EPLP0DKL9 152 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 OR10G9Q8NGN4 311 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 OR10G7Q8NGN6 311 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 TNFRSF18Q9Y5U5 241 aa12.79□□□□□ -0.36
CCDC88B-206ENST00000473405 TRAV4A0A0B4J268 109 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 TRAV21A0A0B4J279 112 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 TYMSP04818 313 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 GYPEP15421 78 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 SRIP30626 198 aa12.78□□□□□ -0.36
CCDC88B-206ENST00000473405 Q6ZNX1 250 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms