RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 DMXL1Q9Y485 3027 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 IQSEC2Q5JU85 1478 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 LOC400499M0QZD8 3231 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 A0A096LPI6 279 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 HIST1H2BKO60814 126 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 IFNA14P01570 189 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 HIST1H2BJP06899 126 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 CCL4P13236 92 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 OGNP20774 298 aaKnown RBP0.16□□□□□ -2.38
CLK1-209ENST00000472679 PHBP35232 272 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 TMED2Q15363 201 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 HACD4Q5VWC8 232 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 CCL19Q99731 98 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 KDM5AP29375 1690 aaKnown RBP0.16□□□□□ -2.38
CLK1-209ENST00000472679 LAMA5O15230 3695 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 SMG1Q96Q15 3661 aaKnown RBP0.16□□□□□ -2.38
CLK1-209ENST00000472679 SPENQ96T58 3664 aaKnown RBP0.16□□□□□ -2.38
CLK1-209ENST00000472679 HTTP42858 3142 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 NISCHQ9Y2I1 1504 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 NCAPD3P42695 1498 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 WDFY3Q8IZQ1 3526 aa0.16□□□□□ -2.38
CLK1-209ENST00000472679 DYNC1H1Q14204 4646 aaKnown RBP0.15□□□□□ -2.38
CLK1-209ENST00000472679 UTRNP46939 3433 aa0.15□□□□□ -2.38
CLK1-209ENST00000472679 NBASA2RRP1 2371 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 TRAV5A0A0B4J249 113 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 E2F6O75461 281 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 IGHV3-33P01772 117 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 MRPS25P82663 173 aaKnown RBP0.15□□□□□ -2.39
CLK1-209ENST00000472679 AKR1C8PQ5T2L2 129 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 LELP1Q5T871 98 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 LYRM2Q9NU23 88 aaPredicted RBP0.15□□□□□ -2.39
CLK1-209ENST00000472679 SSR3Q9UNL2 185 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 LRP1Q07954 4544 aaKnown RBP0.15□□□□□ -2.39
CLK1-209ENST00000472679 NHSL1Q5SYE7 1610 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 HSPG2P98160 4391 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 MGAQ8IWI9 3026 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 CSMD2Q7Z408 3487 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 SYNJ1O43426 1573 aa0.15□□□□□ -2.39
CLK1-209ENST00000472679 CDH23Q9H251 3354 aa0.14□□□□□ -2.39
CLK1-209ENST00000472679 CD109Q6YHK3 1445 aa0.14□□□□□ -2.39
CLK1-209ENST00000472679 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.14□□□□□ -2.392e-8■■■■□ 25.2
CLK1-209ENST00000472679 ADGRG4Q8IZF6 3080 aa0.14□□□□□ -2.39
CLK1-209ENST00000472679 SH3BGRL3Q9H299 93 aa0.14□□□□□ -2.39
CLK1-209ENST00000472679 FRYLO94915 3013 aa0.14□□□□□ -2.39
CLK1-209ENST00000472679 ZCCHC6Q5VYS8 1495 aaKnown RBP0.14□□□□□ -2.39
CLK1-209ENST00000472679 SLIT1O75093 1534 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 LYRM1O43325 122 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 RPL37AP61513 92 aaKnown RBP0.13□□□□□ -2.39
CLK1-209ENST00000472679 KRTAP19-6Q3LI70 58 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 ZCCHC23Q6ZST2 131 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 FAM216BQ8N7L0 139 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 BOKQ9UMX3 212 aaPredicted RBP0.13□□□□□ -2.39
CLK1-209ENST00000472679 DNAH1Q9P2D7 4330 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 PIK3C2AO00443 1686 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 TACC2O95359 2948 aa0.13□□□□□ -2.39
CLK1-209ENST00000472679 VPS13AQ96RL7 3174 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 HRNRQ86YZ3 2850 aaPredicted RBP0.12□□□□□ -2.39
CLK1-209ENST00000472679 SPTBN2O15020 2390 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 FRYQ5TBA9 3013 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 RBBP6Q7Z6E9 1792 aaKnown RBP0.12□□□□□ -2.39
CLK1-209ENST00000472679 XIRP2A4UGR9 3374 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 PKD1P98161 4303 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 PTPRZ1P23471 2315 aaPredicted RBP0.12□□□□□ -2.39
CLK1-209ENST00000472679 APOA2P02652 100 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 HBBP68871 147 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 C1orf140Q5VVS0 124 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 LINC00299Q6ZSB3 139 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 CHMP6Q96FZ7 201 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 PBDC1Q9BVG4 233 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 LINC00846Q9NV44 126 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 PKHD1P08F94 4074 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 RAPGEF6Q8TEU7 1601 aa0.12□□□□□ -2.39
CLK1-209ENST00000472679 CICQ96RK0 1608 aaPredicted RBP0.12□□□□□ -2.39
CLK1-209ENST00000472679 PRKDCP78527 4128 aaKnown RBP0.12□□□□□ -2.39
CLK1-209ENST00000472679 LOC285556D6RIA3 1793 aa0.11□□□□□ -2.39
CLK1-209ENST00000472679 CDK12Q9NYV4 1490 aaPredicted RBP0.11□□□□□ -2.39
CLK1-209ENST00000472679 PIAS1O75925 651 aa0.11□□□□□ -2.39
CLK1-209ENST00000472679 DEFB132Q7Z7B7 95 aa0.11□□□□□ -2.39
CLK1-209ENST00000472679 RMND5BQ96G75 393 aaPredicted RBP0.11□□□□□ -2.39
CLK1-209ENST00000472679 GINS3Q9BRX5 216 aa0.11□□□□□ -2.39
CLK1-209ENST00000472679 CST11Q9H112 138 aa0.11□□□□□ -2.39
CLK1-209ENST00000472679 PLECQ15149 4684 aaKnown RBP0.11□□□□□ -2.39
CLK1-209ENST00000472679 CAMSAP2Q08AD1 1489 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 BCL9LQ86UU0 1499 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 MRC2Q9UBG0 1479 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 CHD7Q9P2D1 2997 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 CSN2P05814 226 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 SPRR2DP22532 72 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 ASIPP42127 132 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 MT4P47944 62 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 FXYD6P3P58550 94 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 DIAPH2-AS1Q14236 149 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 VMA21Q3ZAQ7 101 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 PHF5AQ7RTV0 110 aaKnown RBP0.1□□□□□ -2.39
CLK1-209ENST00000472679 LINC00269Q8N2A0 174 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 DYNC2H1Q8NCM8 4307 aaKnown RBP0.1□□□□□ -2.39
CLK1-209ENST00000472679 F8P00451 2351 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 CSMD3Q7Z407 3707 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 TRIOO75962 3097 aa0.1□□□□□ -2.39
CLK1-209ENST00000472679 SACSQ9NZJ4 4579 aa0.09□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms