RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HLA-DRB5Q30154 266 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 CENPWQ5EE01 88 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 Q6ZVH6 145 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 PIFOQ8TCI5 191 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 RNASEH2CQ8TDP1 164 aaKnown RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 TIMM17AQ99595 171 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 MRPL32Q9BYC8 188 aaKnown RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 TMEM133Q9H2Q1 129 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 ZNF430Q9H8G1 570 aaPredicted RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 IL36BQ9NZH7 164 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 KAAG1Q9UBP8 84 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 KLF12Q9Y4X4 402 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 FREM1Q5H8C1 2179 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 MED13Q9UHV7 2174 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 MYO7BQ6PIF6 2116 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 USP34Q70CQ2 3546 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 IGKV1D-37A0A075B6S9 117 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 IGHV3-21A0A0B4J1V1 117 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 IGHV2-26A0A0B4J1V2 119 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 IGHV1-69DA0A0B4J2H0 117 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 TCRBV4S1A1TA0A5B7 111 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 ZNF705GA8MUZ8 300 aaPredicted RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 GGTLC3B5MD39 225 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 H0Y9J4 135 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 BUB1B-PAK6H3BSN5 160 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 SPINK4O60575 86 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 APELAP0DMC3 54 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 PYYP10082 97 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 HIST1H1BP16401 226 aaKnown RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 ORM2P19652 201 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 CBLN1P23435 193 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 CNTFRP26992 372 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 CA7P43166 264 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 RPL27AP46776 148 aaKnown RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 LGALS7P47929 136 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 ZNF137PP52743 207 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 SYNJ2BPP57105 145 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 JOSD1Q15040 202 aaPredicted RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 DNLZQ5SXM8 178 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 C10orf113Q5VZT2 155 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 HCP5Q6MZN7 132 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 OR8I2Q8N0Y5 310 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 MUC15Q8N387 334 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 Q8N976 141 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 OR8B3Q8NGG8 313 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 TNFRSF14Q92956 283 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 FAM167A-AS1Q96KT0 104 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 OR8B2Q96RD0 313 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 RNASE7Q9H1E1 156 aaKnown RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 PRO1933Q9H354 126 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 ZNF355PQ9NSJ1 428 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 MRPL36Q9P0J6 103 aaKnown RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 AMMECR1Q9Y4X0 333 aaPredicted RBP2.77□□□□□ -1.97
VPS29-202ENST00000447578 INSIG2Q9Y5U4 225 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 LY96Q9Y6Y9 160 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 ARL2-SNX15V9GYD0 113 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 SHANK1Q9Y566 2161 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 MED12LQ86YW9 2145 aa2.77□□□□□ -1.97
VPS29-202ENST00000447578 RTTNQ86VV8 2226 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 ZNF407Q9C0G0 2248 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 TRAV9-1A0A075B6T8 112 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 IGHV1-3A0A0C4DH29 117 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 A0A1W2PRE2 83 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 IGLC7A0M8Q6 106 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 GRIFINA4D1Z8 144 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 LINC01619G3V211 115 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 TSTD3H0UI37 97 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 CORTO00230 105 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 SNAI2O43623 268 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 NUPR1O60356 82 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 LY6HO94772 140 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 OR5AL1P0C617 328 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 GZMBP10144 247 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 TCL1AP56279 114 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 YPEL3P61236 119 aaPredicted RBP2.76□□□□□ -1.97
VPS29-202ENST00000447578 PKIAP61925 76 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 GNG5P63218 68 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 RPL19P84098 196 aaKnown RBP2.76□□□□□ -1.97
VPS29-202ENST00000447578 DEFA6Q01524 100 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 FXYD3Q14802 87 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 PLGLAQ15195 96 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 CEMP1Q6PRD7 247 aaPredicted RBP2.76□□□□□ -1.97
VPS29-202ENST00000447578 PATE2Q6UY27 113 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 LINC00305Q7Z4B0 112 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 PCP2Q8IVA1 136 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 TMEM256Q8N2U0 113 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 CMTM2Q8TAZ6 248 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 BLNKQ8WV28 456 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 C22orf15Q8WYQ4 148 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 FXYD5Q96DB9 178 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 IGF2BP2-AS1Q96M15 143 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 TRGV9Q99603 122 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 CHAC1Q9BUX1 264 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 FBXL15Q9H469 300 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 OSTCQ9NRP0 149 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 CELA1Q9UNI1 258 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 SIGLEC9Q9Y336 463 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 V9GYV3 84 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 PTPRBP23467 1997 aa2.76□□□□□ -1.97
VPS29-202ENST00000447578 ESPL1Q14674 2120 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms