RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 PXDC1Q5TGL8 231 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 Q6ZRU5 148 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 C15orf40Q8WUR7 153 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 RABL2AQ9UBK7 228 aaPredicted RBP5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 SCP2D1Q9UJQ7 156 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 RABL2BQ9UNT1 228 aa5.04□□□□□ -1.6
LIMCH1-204ENST00000446625 TRAV8-3A0A0A6YYJ7 113 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 TRAV4A0A0B4J268 109 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 IGHV3-16A0A0C4DH30 117 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 DUXBA0A1W2PPF3 345 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 RNF222A6NCQ9 220 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 GOSR2O14653 212 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 CTDSPLO15194 276 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 COX7A2P2O60397 106 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 NMBP08949 121 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 IL7P13232 177 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 PYDC2Q56P42 97 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 MUC21Q5SSG8 566 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 LELP1Q5T871 98 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 Q8N976 141 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 OR4C5Q8NGB2 326 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 TRIM63Q969Q1 353 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 MRPL53Q96EL3 112 aaKnown RBP5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 SCGB3A2Q96PL1 93 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 NPVFQ9HCQ7 196 aa5.03□□□□□ -1.6
LIMCH1-204ENST00000446625 AGPAT2O15120 278 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 SCGB1D2O95969 90 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 PFN1P07737 140 aaKnown RBP5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 GATA1P15976 413 aaPredicted RBP5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 PPP1R1AQ13522 171 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 GUK1Q16774 197 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 C10orf113Q5VZT2 155 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 DAZ4Q86SG3 579 aaKnown RBP5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 ZNF546Q86UE3 836 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 ATP6V0E2Q8NHE4 81 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 PAXXQ9BUH6 204 aa5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 DAZ3Q9NR90 486 aaKnown RBP5.02□□□□□ -1.61
LIMCH1-204ENST00000446625 FAT4Q6V0I7 4981 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 IGKV2-40A0A087WW87 121 aaPredicted RBP5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 PIGBOS1A0A0B4J2F0 54 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 KRTAP9-6A0A140TA67 174 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 PLA2G10O15496 165 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 SSSCA1O60232 199 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 ZNF253O75346 499 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 NDUFB4O95168 129 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 IGKV2D-40P01614 121 aaPredicted RBP5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 METTL15P1P0C7V9 234 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 POLR2GP62487 172 aaKnown RBP eCLIP5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 TMEM183BQ1AE95 376 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 TMEM183AQ8IXX5 376 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 EXOC3-AS1Q8N2X6 119 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 SLC25A29Q8N8R3 303 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 DNAJC30Q96LL9 226 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 SPXQ9BT56 116 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 PSENENQ9NZ42 101 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 RPH3ALQ9UNE2 315 aa5.01□□□□□ -1.61
LIMCH1-204ENST00000446625 TRBV19A0A075B6N1 114 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 FNDC10F2Z333 226 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 SFT2D2O95562 160 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 ID3Q02535 119 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 TOR2AQ5JU69 321 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 TMEM78Q5T7P6 136 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 TRIQKQ629K1 86 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 TMEM14EPQ6UXP3 125 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 TOMM5Q8N4H5 51 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 Q8TAT8 98 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 MGST2Q99735 147 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 GTSF1LQ9H1H1 148 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 ZNF492Q9P255 531 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 MGAT4CQ9UBM8 478 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 PRELID1Q9Y255 219 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 COX11Q9Y6N1 276 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 LPAP08519 4548 aa5□□□□□ -1.61
LIMCH1-204ENST00000446625 IGKV2D-24A0A075B6R9 120 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 GGTLC3B5MD39 225 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 M0R2P5 195 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 HIST1H1EP10412 219 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 FAUP35544 74 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 DEFA1P59665 94 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 DEFA3P59666 94 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 UBE2MP61081 183 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 ARL16Q0P5N6 197 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 RGS21Q2M5E4 152 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 TMEM128Q5BJH2 165 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 SMIM8Q96KF7 97 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 FLVCR2Q9UPI3 526 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 TIMM9Q9Y5J7 89 aa4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.99□□□□□ -1.61
LIMCH1-204ENST00000446625 TRGV11A0A075B6L2 103 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 TRAV8-1A0A0A6YYK1 113 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 FBLL1A6NHQ2 334 aaKnown RBP4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 PANO1I0J062 215 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 CCSO14618 274 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 LYRM1O43325 122 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 GNRH2O43555 120 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 PTTG1O95997 202 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 PYYP10082 97 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 BTCP35070 178 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 ZNF138P52744 262 aa4.98□□□□□ -1.61
LIMCH1-204ENST00000446625 ZNF266Q14584 549 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms