RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 IGHV3OR16-12A0A075B7B8 117 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 RAB19A4D1S5 217 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 RPL35P42766 123 aaKnown RBP12.55□□□□□ -0.4
LIME1-202ENST00000444951 BTN1A1Q13410 526 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 TMEM183BQ1AE95 376 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 PRR9Q5T870 116 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 NHLRC2Q8NBF2 726 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 FAM19A4Q96LR4 140 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 ODF3Q96PU9 254 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 C1QTNF4Q9BXJ3 329 aa12.55□□□□□ -0.4
LIME1-202ENST00000444951 TRAV12-3A0A0B4J271 114 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 UBE2CO00762 179 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 INSP01308 110 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 AMBPP02760 352 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 SRP19P09132 144 aaKnown RBP12.54□□□□□ -0.4
LIME1-202ENST00000444951 GFI1BQ5VTD9 330 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 ZFAND2AQ8N6M9 145 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 ZMAT4Q9H898 229 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 KLF12Q9Y4X4 402 aa12.54□□□□□ -0.4
LIME1-202ENST00000444951 FBLL1A6NHQ2 334 aaKnown RBP12.53□□□□□ -0.4
LIME1-202ENST00000444951 C9JQL5 133 aa12.53□□□□□ -0.4
LIME1-202ENST00000444951 CRXO43186 299 aaPredicted RBP12.53□□□□□ -0.4
LIME1-202ENST00000444951 S100A9P06702 114 aaKnown RBP12.53□□□□□ -0.4
LIME1-202ENST00000444951 ZFAND6Q6FIF0 208 aa12.53□□□□□ -0.4
LIME1-202ENST00000444951 IGF2BP2-AS1Q96M15 143 aa12.53□□□□□ -0.4
LIME1-202ENST00000444951 TMEM208Q9BTX3 173 aa12.53□□□□□ -0.4
LIME1-202ENST00000444951 ALMS1Q8TCU4 4167 aa12.52□□□□□ -0.4
LIME1-202ENST00000444951 C7orf71A4D174 169 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 TMEM250H0YL14 139 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 CRISP2P16562 243 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 CENPWQ5EE01 88 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 SAPCD1Q5SSQ6 148 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 COMMD7Q86VX2 200 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 BAGE2Q86Y30 109 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 PARLQ9H300 379 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 LENEPQ9Y5L5 61 aa12.52□□□□□ -0.41
LIME1-202ENST00000444951 KLLNB2CW77 178 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 LTAP01374 205 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 RBMY1A1P0DJD3 496 aaKnown RBP12.51□□□□□ -0.41
LIME1-202ENST00000444951 RBMY1CP0DJD4 496 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 HTN1P15515 57 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 GNG4P50150 75 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 TAS2R60P59551 318 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 RBMY1FQ15415 496 aaKnown RBP12.51□□□□□ -0.41
LIME1-202ENST00000444951 Q6ZQT7 251 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 Q6ZWC4 215 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 EDA2RQ9HAV5 297 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 ZFP30Q9Y2G7 519 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 GOLT1BQ9Y3E0 138 aa12.51□□□□□ -0.41
LIME1-202ENST00000444951 TRBV7-9A0A0J9YWB2 115 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 TRBV6-1A0A0K0K1D8 114 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 PGPEP1LA6NFU8 196 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 SPRY2O43597 315 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 GCGP01275 180 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 SMUG1Q53HV7 270 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 C1orf158Q8N1D5 194 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 CSNK1G2-AS1Q8NCQ2 148 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 RNF183Q96D59 192 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 LINC01587Q99440 93 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 NIPSNAP3BQ9BS92 247 aa12.5□□□□□ -0.41
LIME1-202ENST00000444951 MGST1P10620 155 aaKnown RBP12.49□□□□□ -0.41
LIME1-202ENST00000444951 ZNF80P51504 273 aaPredicted RBP12.49□□□□□ -0.41
LIME1-202ENST00000444951 ZC2HC1AQ96GY0 325 aa12.49□□□□□ -0.41
LIME1-202ENST00000444951 SMIM7Q9BQ49 75 aa12.49□□□□□ -0.41
LIME1-202ENST00000444951 SPATA25Q9BR10 227 aa12.49□□□□□ -0.41
LIME1-202ENST00000444951 NAGKQ9UJ70 344 aa12.49□□□□□ -0.41
LIME1-202ENST00000444951 TRBV20OR9-2A0A075B6H5 130 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 LCE6AA0A183 80 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 LINC00862A6NCI5 91 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 ZNF727A8MUV8 499 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 PRM2P04554 102 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 PRR27Q6MZM9 219 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 TMEM183AQ8IXX5 376 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 OR11H2Q8NH07 326 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 OVOL2Q9BRP0 275 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 SMDT1Q9H4I9 107 aa12.48□□□□□ -0.41
LIME1-202ENST00000444951 ZNF705GA8MUZ8 300 aaPredicted RBP12.47□□□□□ -0.41
LIME1-202ENST00000444951 MUC21Q5SSG8 566 aa12.47□□□□□ -0.41
LIME1-202ENST00000444951 NDUFS6O75380 124 aaKnown RBP12.46□□□□□ -0.41
LIME1-202ENST00000444951 ZNF324O75467 553 aaPredicted RBP12.46□□□□□ -0.41
LIME1-202ENST00000444951 SFTA3P0C7M3 94 aa12.46□□□□□ -0.41
LIME1-202ENST00000444951 SOHLH1Q5JUK2 328 aa12.46□□□□□ -0.41
LIME1-202ENST00000444951 TRAV21A0A0B4J279 112 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 H7BYZ3 331 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 IGLV2-8P01709 118 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 Q6AWC8 147 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 ZNF705AQ6ZN79 300 aaPredicted RBP12.45□□□□□ -0.42
LIME1-202ENST00000444951 TMEM256Q8N2U0 113 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 C20orf144Q9BQM9 153 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 MLST8Q9BVC4 326 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 TP53TG1Q9Y2A0 90 aa12.45□□□□□ -0.42
LIME1-202ENST00000444951 C9JCJ5 164 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 SH2D1AO60880 128 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 PFN1P07737 140 aaKnown RBP12.44□□□□□ -0.42
LIME1-202ENST00000444951 CRIP1P50238 77 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 FAM162BQ5T6X4 162 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 OCC1Q8TAD7 63 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 X6R8D5 127 aa12.44□□□□□ -0.42
LIME1-202ENST00000444951 FABP5P3A8MUU1 101 aa12.43□□□□□ -0.42
LIME1-202ENST00000444951 DEFB4AO15263 64 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms