RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 A0A0J9YY99 117 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 J3QLI3 93 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 APOC4P55056 127 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 EREGO14944 169 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 NKAPP1Q8N9T2 125 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 NCOR1P1Q9H4R4 102 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 FXYD5Q96DB9 178 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 NPYP01303 97 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 EDA2RQ9HAV5 297 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 IGHV1-24A0A0C4DH33 117 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 HEATR5AQ86XA9 2040 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 PIP4P1Q86T03 277 aa13.59□□□□□ -0.23
PTPRF-209ENST00000438120 CT83Q5H943 113 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 DNAJC30Q96LL9 226 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 FAM231BA6NCW3 169 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 GNRH2O43555 120 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 SIGLEC8Q9NYZ4 499 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 OVOL2Q9BRP0 275 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 TMEM14CQ9P0S9 112 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 ANGP03950 147 aaKnown RBP13.58□□□□□ -0.24
PTPRF-209ENST00000438120 VWC2Q2TAL6 325 aa13.58□□□□□ -0.24
PTPRF-209ENST00000438120 WIPF3A6NGB9 483 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 CD5LO43866 347 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 IGLV2-23P01705 113 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 IGHV2-5P01817 119 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 UBE2V1Q13404 147 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 VOPP1Q96AW1 172 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 TMEM126AQ9H061 195 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 RPL32P62910 135 aaKnown RBP13.57□□□□□ -0.24
PTPRF-209ENST00000438120 MORN5Q5VZ52 161 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 SPINK8P0C7L1 97 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 CGB7P0DN87 165 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 NOP10Q9NPE3 64 aaKnown RBP13.57□□□□□ -0.24
PTPRF-209ENST00000438120 DOCK11Q5JSL3 2073 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 SMIM27A0A1W2PRY6 76 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 NBL1P41271 181 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 MYLKQ15746 1914 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 ZNF491Q8N8L2 437 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 ATP6V0BQ99437 205 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 KIAA1671Q9BY89 1806 aa13.57□□□□□ -0.24
PTPRF-209ENST00000438120 A8MWP6 167 aa13.56□□□□□ -0.24
PTPRF-209ENST00000438120 MRPL35Q9NZE8 188 aaKnown RBP13.56□□□□□ -0.24
PTPRF-209ENST00000438120 PRSS29PA6NIE9 313 aa13.56□□□□□ -0.24
PTPRF-209ENST00000438120 NRGNQ92686 78 aa13.56□□□□□ -0.24
PTPRF-209ENST00000438120 DYNAPQ8N1N2 210 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.55□□□□□ -0.243e-7■■■□□ 16.6
PTPRF-209ENST00000438120 TRAV25A0A0B4J276 109 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 FOXE3Q13461 319 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 SUMO4Q6EEV6 95 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 APRG1Q8IVJ8 170 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 NDUFA12Q9UI09 145 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 IGHV2-70P01814 119 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 HOXD3P31249 432 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-209ENST00000438120 Q6ZWC4 215 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 C11orf53Q8IXP5 236 aa13.55□□□□□ -0.24
PTPRF-209ENST00000438120 ELANEP08246 267 aa13.54□□□□□ -0.24
PTPRF-209ENST00000438120 MGAMO43451 1857 aa13.54□□□□□ -0.24
PTPRF-209ENST00000438120 IGHV4-38-2P0DP08 117 aa13.54□□□□□ -0.24
PTPRF-209ENST00000438120 KAAG1Q9UBP8 84 aa13.54□□□□□ -0.24
PTPRF-209ENST00000438120 KLF5Q13887 457 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-209ENST00000438120 FRMPD3Q5JV73 1810 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 IGHV4-61A0A0C4DH41 118 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 VPREB3Q9UKI3 123 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 SCRT2Q9NQ03 307 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 SMIM2Q9BVW6 85 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 COX11Q9Y6N1 276 aa13.53□□□□□ -0.24
PTPRF-209ENST00000438120 Q6ZQT7 251 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 CFHR4Q92496 578 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 PLXNA4Q9HCM2 1894 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 IGLC7A0M8Q6 106 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 SLURP1P55000 103 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 FAM231DQ6ZW35 169 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 RITA1Q96K30 269 aa13.52□□□□□ -0.24
PTPRF-209ENST00000438120 MED13LQ71F56 2210 aa13.52□□□□□ -0.25
PTPRF-209ENST00000438120 IGLV3-1P01715 115 aa13.52□□□□□ -0.25
PTPRF-209ENST00000438120 IGHV4-30-2A0A087WSY4 118 aa13.52□□□□□ -0.25
PTPRF-209ENST00000438120 SLX1AQ9BQ83 275 aa13.52□□□□□ -0.25
PTPRF-209ENST00000438120 U3KQE9 123 aa13.52□□□□□ -0.25
PTPRF-209ENST00000438120 K7EN84 100 aa13.51□□□□□ -0.25
PTPRF-209ENST00000438120 CCL24O00175 119 aa13.51□□□□□ -0.25
PTPRF-209ENST00000438120 XCL1P47992 114 aa13.51□□□□□ -0.25
PTPRF-209ENST00000438120 MRPL53Q96EL3 112 aaKnown RBP13.51□□□□□ -0.25
PTPRF-209ENST00000438120 IGKV1OR2-108A0A075B7D4 117 aa13.51□□□□□ -0.25
PTPRF-209ENST00000438120 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-209ENST00000438120 IGKV2-29A2NJV5 120 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-209ENST00000438120 AGPAT4-IT1Q9H0P7 198 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 H3BMM0 161 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 SOCS3O14543 225 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 UBE2WQ96B02 151 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 FGF23Q9GZV9 251 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-209ENST00000438120 TSSC4Q9Y5U2 329 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-209ENST00000438120 TSC2P49815 1807 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 FGF6P10767 208 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 EGR2P11161 476 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-209ENST00000438120 IGLL1P15814 213 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 Q9HAA7 133 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 DKK2Q9UBU2 259 aa13.5□□□□□ -0.25
PTPRF-209ENST00000438120 IGKV2D-24A0A075B6R9 120 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 BLCAPP62952 87 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 PRR20EP86478 221 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms