RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 RGS13O14921 159 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 IFNA7P01567 189 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 SFT2D1Q8WV19 159 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 NOP10Q9NPE3 64 aaKnown RBP13.28□□□□□ -0.28
SHH-203ENST00000435425 EPDR1Q9UM22 224 aa13.28□□□□□ -0.28
SHH-203ENST00000435425 TIMM8BQ9Y5J9 83 aaPredicted RBP13.28□□□□□ -0.28
SHH-203ENST00000435425 TRBV7-9A0A0J9YWB2 115 aa13.27□□□□□ -0.29
SHH-203ENST00000435425 K7EQM0 130 aa13.27□□□□□ -0.29
SHH-203ENST00000435425 EIF4E3Q8N5X7 224 aaKnown RBP13.27□□□□□ -0.29
SHH-203ENST00000435425 LENEPQ9Y5L5 61 aa13.27□□□□□ -0.29
SHH-203ENST00000435425 FAM74A7A6NL05 159 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 SNURFLB1AK76 121 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 F6UZH7 168 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 ZFP69Q49AA0 526 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 MUC21Q5SSG8 566 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 TVP23CQ96ET8 276 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 TREM1Q9NP99 234 aa13.26□□□□□ -0.29
SHH-203ENST00000435425 KMT2CQ8NEZ4 4911 aaKnown RBP13.25□□□□□ -0.29
SHH-203ENST00000435425 IGHV4-4A0A075B6R2 117 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 IGHV1OR15-1A0A075B7D0 117 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 SERTM2A0A1B0GWG4 89 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 LY6G6CO95867 125 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 H2AFB1P0C5Y9 115 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 CST9LP1Q5W188 147 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 DPPA3Q6W0C5 159 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 PRNTQ86SH4 94 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 CYB561D1Q8N8Q1 229 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 MBD3L1Q8WWY6 194 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 NDFIP1Q9BT67 221 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 TP53TG3Q9ULZ0 132 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 PSG8Q9UQ74 426 aa13.25□□□□□ -0.29
SHH-203ENST00000435425 FLI1Q01543 452 aaPredicted RBP13.24□□□□□ -0.29
SHH-203ENST00000435425 EIF5AL1Q6IS14 154 aaKnown RBP13.24□□□□□ -0.29
SHH-203ENST00000435425 C9orf62Q8N4C0 152 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 LINC00479Q96M42 142 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 LINC00467Q9BRT7 94 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 ATG101Q9BSB4 218 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 GSN-AS1Q9NRJ2 163 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 NAGKQ9UJ70 344 aa13.24□□□□□ -0.29
SHH-203ENST00000435425 TRAV34A0A0B4J273 112 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 SLC51BQ86UW2 128 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 ZNF680Q8NEM1 530 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 LINC00476Q8WZB0 136 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 C8orf49Q96NF6 230 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 NKX6-2Q9C056 277 aaPredicted RBP13.23□□□□□ -0.29
SHH-203ENST00000435425 APLNQ9ULZ1 77 aa13.23□□□□□ -0.29
SHH-203ENST00000435425 GAGE12BA1L429 117 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 PEX7O00628 323 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 PAGE4O60829 102 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 GAGE7O76087 117 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 IGLV2-11P01706 119 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 GAGE12FP0CL80 117 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 GAGE12GP0CL81 117 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 GAGE12IP0CL82 117 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 ANXA2RQ3ZCQ2 193 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 Q6AWC8 147 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 KLF12Q9Y4X4 402 aa13.22□□□□□ -0.29
SHH-203ENST00000435425 ATP5G3P48201 142 aa13.21□□□□□ -0.29
SHH-203ENST00000435425 FAM159AQ6UWV7 190 aa13.21□□□□□ -0.29
SHH-203ENST00000435425 TMEM75Q8N9X5 138 aa13.21□□□□□ -0.29
SHH-203ENST00000435425 C11orf72Q8NBR9 251 aa13.21□□□□□ -0.29
SHH-203ENST00000435425 DYNC2H1Q8NCM8 4307 aaKnown RBP13.21□□□□□ -0.3
SHH-203ENST00000435425 TRAV21A0A0B4J279 112 aa13.2□□□□□ -0.3
SHH-203ENST00000435425 F5H768 121 aa13.2□□□□□ -0.3
SHH-203ENST00000435425 PPT1P50897 306 aa13.2□□□□□ -0.3
SHH-203ENST00000435425 NKX2-5P52952 324 aaPredicted RBP13.2□□□□□ -0.3
SHH-203ENST00000435425 TCTAP57738 103 aa13.2□□□□□ -0.3
SHH-203ENST00000435425 NDUFAF3Q9BU61 184 aa13.2□□□□□ -0.3
SHH-203ENST00000435425 ATP5G1P05496 136 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 SULT1A2P50226 295 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 RAB5CP51148 216 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 TMEM183BQ1AE95 376 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 Q6ZTI0 123 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 TMEM183AQ8IXX5 376 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 HIST1H2BAQ96A08 127 aa13.19□□□□□ -0.3
SHH-203ENST00000435425 TRGV1A0A0A0MS02 117 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 FBLL1A6NHQ2 334 aaKnown RBP13.18□□□□□ -0.3
SHH-203ENST00000435425 GCGP01275 180 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 ZNF80P51504 273 aaPredicted RBP13.18□□□□□ -0.3
SHH-203ENST00000435425 TCL1AP56279 114 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 CCL20P78556 96 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 ZNF415Q09FC8 603 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 DAZ2Q13117 558 aaKnown RBP13.18□□□□□ -0.3
SHH-203ENST00000435425 SMUG1Q53HV7 270 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 ARL2-SNX15V9GYD0 113 aa13.18□□□□□ -0.3
SHH-203ENST00000435425 PLECQ15149 4684 aaKnown RBP13.18□□□□□ -0.3
SHH-203ENST00000435425 GNRH2O43555 120 aa13.17□□□□□ -0.3
SHH-203ENST00000435425 SAPCD1Q5SSQ6 148 aa13.17□□□□□ -0.3
SHH-203ENST00000435425 IBA57Q5T440 356 aaKnown RBP13.17□□□□□ -0.3
SHH-203ENST00000435425 TMEM88Q6PEY1 159 aa13.17□□□□□ -0.3
SHH-203ENST00000435425 MDFICQ9P1T7 246 aa13.17□□□□□ -0.3
SHH-203ENST00000435425 TRGV11A0A075B6L2 103 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 UBE2G1P62253 170 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 LGALS9CQ6DKI2 356 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 Q86TA4 180 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 LINC00612Q8N6U2 182 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 MRPL16Q9NX20 251 aaKnown RBP13.16□□□□□ -0.3
SHH-203ENST00000435425 GNG13Q9P2W3 67 aa13.16□□□□□ -0.3
SHH-203ENST00000435425 TRGV2A0A075B6R0 118 aa13.15□□□□□ -0.3
SHH-203ENST00000435425 TEX46H3BTG2 121 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms