RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CNTLNQ9NXG0 1405 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 TRAV14DV4A0A0A6YYC5 116 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 LOC100130705A0A1B0GUX0 176 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 C5orf67F2Z3F1 127 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 CXCL8P10145 99 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 BRS3P32247 399 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 DEFB113Q30KQ7 82 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 SNX29P2Q8IUI4 249 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 CLECL1Q8IZS7 167 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 C9orf163Q8N9P6 203 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 ZFP30Q9Y2G7 519 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 PHLPP1O60346 1717 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 CPAMD8Q8IZJ3 1885 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 ERBINQ96RT1 1412 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 TMEM218A2RU14 115 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 J3QLW9 94 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 TEX261Q6UWH6 196 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 GKN2Q86XP6 184 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 LINC00269Q8N2A0 174 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 ACBD7Q8N6N7 88 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 TAS2R8Q9NYW2 309 aa2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 KTN1Q86UP2 1357 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-206ENST00000430086 A0A0G2JQZ4 141 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 C2orf70A6NJV1 201 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 TNFP01375 233 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 PDE6HQ13956 83 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 Q8N2B8 174 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 PLPP5Q8NEB5 264 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 IER3IP1Q9Y5U9 82 aa2.59□□□□□ -1.99
CCDC88A-206ENST00000430086 ARHGAP32A7KAX9 2087 aa2.59□□□□□ -2
CCDC88A-206ENST00000430086 KIAA2026Q5HYC2 2103 aa2.59□□□□□ -2
CCDC88A-206ENST00000430086 SCRIBQ14160 1630 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 TRGV4A0A0C4DH28 118 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 IFNA17P01571 189 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 Q56UQ5 140 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 VSTM2AQ8TAG5 236 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 SEC11CQ9BY50 192 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 AGPAT4-IT1Q9H0P7 198 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 MYOM2P54296 1465 aa2.58□□□□□ -2
CCDC88A-206ENST00000430086 TRIOBPQ9H2D6 2365 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 SPAARA0A1B0GVQ0 90 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 SDHAF1A6NFY7 115 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 A6NN06 94 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 H3BRN7 92 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 CCDC179H3BU77 68 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 APOC4-APOC2K7ER74 178 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 APOC2P02655 101 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 P0C880 135 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 Q1T7F1 81 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 MIC13Q5XKP0 118 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 OR2T2Q6IF00 324 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 C3orf62Q6ZUJ4 267 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 FAM19A2Q8N3H0 131 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 OR10AG1Q8NH19 301 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 SERP1Q9Y6X1 66 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 MYH7P12883 1935 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 CCDC88CQ9P219 2028 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 CFTRP13569 1480 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 GLI3P10071 1580 aa2.57□□□□□ -2
CCDC88A-206ENST00000430086 TRAV2A0A0B4J234 112 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 C1orf137Q5JT78 98 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 MRPL54Q6P161 138 aaKnown RBP2.56□□□□□ -2
CCDC88A-206ENST00000430086 ZNF833PQ6ZTB9 187 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 SPTSSAQ969W0 71 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 RPRMQ9NS64 109 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 A2ML1A8K2U0 1454 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 FOCADQ5VW36 1801 aa2.56□□□□□ -2
CCDC88A-206ENST00000430086 TRAV30A0A087WSZ9 112 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 PIGBOS1A0A0B4J2F0 54 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 M0R143 59 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 KLF7O75840 302 aaPredicted RBP2.55□□□□□ -2
CCDC88A-206ENST00000430086 SNCGO76070 127 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 IL5P05113 134 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 PIPP12273 146 aaPredicted RBP2.55□□□□□ -2
CCDC88A-206ENST00000430086 PTPRBP23467 1997 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 MIR22HGQ0VDD5 57 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 FOXI2Q6ZQN5 318 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 SLC25A26Q70HW3 274 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 SVBPQ8N300 66 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 DYNLRB2Q8TF09 96 aa2.55□□□□□ -2
CCDC88A-206ENST00000430086 MRPL57Q9BQC6 102 aaKnown RBP2.55□□□□□ -2
CCDC88A-206ENST00000430086 CHCHD2Q9Y6H1 151 aaPredicted RBP2.55□□□□□ -2
CCDC88A-206ENST00000430086 ZFC3H1O60293 1989 aaKnown RBP2.54□□□□□ -2
CCDC88A-206ENST00000430086 TANC2Q9HCD6 1990 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 MCRIP1C9JLW8 97 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 F8W1H4 67 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 GEMIN2O14893 280 aaKnown RBP2.54□□□□□ -2
CCDC88A-206ENST00000430086 ADCYAP1P18509 176 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 C5orf17Q8NAS9 161 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 Q8TAT8 98 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 ORMDL1Q9P0S3 153 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 MYLKQ15746 1914 aa2.54□□□□□ -2
CCDC88A-206ENST00000430086 ADGRB1O14514 1584 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 NDUFB6O95139 128 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 COX7CP15954 63 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 PKIAP61925 76 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 HSD52Q0P140 79 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 CATR1Q13166 79 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 TPRXLQ17RH7 258 aa2.53□□□□□ -2
CCDC88A-206ENST00000430086 FAM74A1Q5RGS3 127 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms