RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MRPL53Q96EL3 112 aaKnown RBP12.19□□□□□ -0.46
PTPRF-206ENST00000429895 GVINP1Q7Z2Y8 2422 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 ADCYAP1P18509 176 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 VPREB3Q9UKI3 123 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 WIPF3A6NGB9 483 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 NPYP01303 97 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 INAFM2P0DMQ5 153 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 C17orf77Q96MU5 243 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 KIAA2026Q5HYC2 2103 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 SLURP1P55000 103 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 HERVK_113P63121 156 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 VOPP1Q96AW1 172 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 SLAQ13239 276 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 RHOHQ15669 191 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 IGHG4P01861 327 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 PHF3Q92576 2039 aaKnown RBP12.18□□□□□ -0.46
PTPRF-206ENST00000429895 PRSS33Q8NF86 280 aa12.18□□□□□ -0.46
PTPRF-206ENST00000429895 POLR3KQ9Y2Y1 108 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-206ENST00000429895 SIGLEC8Q9NYZ4 499 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 MRPL35Q9NZE8 188 aaKnown RBP12.17□□□□□ -0.46
PTPRF-206ENST00000429895 SPTBN2O15020 2390 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 SBF1O95248 1867 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 C15orf65H3BRN8 121 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 CFHR4Q92496 578 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 Q0VG73 95 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 IGHV3-30P01768 117 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 IGHV3-33P01772 117 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 IGHV2-5P01817 119 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 IGHV3-30-3P0DP02 117 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 IGHV3-30-5P0DP03 117 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 LINC00311Q8N616 119 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 ESM1Q9NQ30 184 aa12.17□□□□□ -0.46
PTPRF-206ENST00000429895 CACNA1BQ00975 2339 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 ZNF726P1Q15940 193 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 PIFOQ8TCI5 191 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 RSPO3Q9BXY4 272 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-206ENST00000429895 ABCA4P78363 2273 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 ZNF124Q15973 351 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 FOXI2Q6ZQN5 318 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 TMEM14CQ9P0S9 112 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 TCF20Q9UGU0 1960 aaKnown RBP12.16□□□□□ -0.46
PTPRF-206ENST00000429895 RS1O15537 224 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 C9JQL5 133 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 FOXE3Q13461 319 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 CT83Q5H943 113 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 PLA2G2CQ5R387 149 aa12.16□□□□□ -0.46
PTPRF-206ENST00000429895 ANK1P16157 1881 aa12.15□□□□□ -0.46
PTPRF-206ENST00000429895 TRAV13-2A0A0B4J235 113 aa12.15□□□□□ -0.46
PTPRF-206ENST00000429895 DEFB113Q30KQ7 82 aa12.15□□□□□ -0.46
PTPRF-206ENST00000429895 IGLV10-54A0A075B6I4 117 aa12.15□□□□□ -0.46
PTPRF-206ENST00000429895 BUB3O43684 328 aa12.15□□□□□ -0.46
PTPRF-206ENST00000429895 K7EM74 188 aa12.15□□□□□ -0.47
PTPRF-206ENST00000429895 IGLV1-44P01699 117 aa12.15□□□□□ -0.47
PTPRF-206ENST00000429895 IGLC1P0CG04 106 aa12.15□□□□□ -0.47
PTPRF-206ENST00000429895 V9GYV3 84 aa12.15□□□□□ -0.47
PTPRF-206ENST00000429895 CADP27708 2225 aa12.15□□□□□ -0.47
PTPRF-206ENST00000429895 DYNAPQ8N1N2 210 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 NRGNQ92686 78 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 CARD19Q96LW7 228 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 C1orf43Q9BWL3 253 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 SHISA9B4DS77 424 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 IGHV4-38-2P0DP08 117 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 C9orf66Q5T8R8 295 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 FXYD5Q96DB9 178 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 SMIM27A0A1W2PRY6 76 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 GP9P14770 177 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 C5orf38Q86SI9 138 aa12.14□□□□□ -0.47
PTPRF-206ENST00000429895 K7ERJ3 54 aa12.13□□□□□ -0.47
PTPRF-206ENST00000429895 BOD1L2Q8IYS8 172 aa12.13□□□□□ -0.47
PTPRF-206ENST00000429895 TICRRQ7Z2Z1 1910 aa12.13□□□□□ -0.47
PTPRF-206ENST00000429895 J3QQQ9 107 aa12.13□□□□□ -0.47
PTPRF-206ENST00000429895 OR11H6Q8NGC7 330 aa12.13□□□□□ -0.47
PTPRF-206ENST00000429895 DOCK7Q96N67 2140 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 IGHV4-30-2A0A087WSY4 118 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 IGHV4-28A0A0C4DH34 117 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 DOCK10Q96BY6 2186 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 TIMM17AQ99595 171 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 IGHV4-61A0A0C4DH41 118 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 GYPEP15421 78 aa12.12□□□□□ -0.47
PTPRF-206ENST00000429895 TRBV20-1A0A075B6N2 111 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 TEX48A0A1B0GUV7 120 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 ZNF524Q96C55 264 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 NCOR1P1Q9H4R4 102 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 CNOT1A5YKK6 2376 aaKnown RBP12.11□□□□□ -0.47
PTPRF-206ENST00000429895 A8MWP6 167 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 TIRAPP58753 221 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 ZNF491Q8N8L2 437 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 CTSZQ9UBR2 303 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 PRO1854Q9UHT4 67 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 CLPSL1A2RUU4 121 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 F8W735 103 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-206ENST00000429895 CEND1Q8N111 149 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 SPRNQ5BIV9 151 aa12.11□□□□□ -0.47
PTPRF-206ENST00000429895 SPTBN1Q01082 2364 aaKnown RBP12.11□□□□□ -0.47
PTPRF-206ENST00000429895 UTF1Q5T230 341 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 ZNF503Q96F45 646 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 DKK2Q9UBU2 259 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 IGHV2-70P01814 119 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 C9orf118A6NHY6 69 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 NDUFS6O75380 124 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms