RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PIP4P2Q8N4L2 257 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 VGLL1Q99990 258 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 FLNBO75369 2602 aaKnown RBP8.28□□□□□ -1.08
CUX1-205ENST00000425244 CENPVL3A0A0U1RRI6 287 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 B4DSR2 109 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 ATP6V0E1O15342 81 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 CLEC3BP05452 202 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 PF4V1P10720 104 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 SLC25A16P16260 332 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 FA2HQ7L5A8 372 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 PRSS3P2Q8NHM4 247 aa8.27□□□□□ -1.08
CUX1-205ENST00000425244 IGHV3-49A0A0A0MS15 119 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 G3V318 75 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 IGHV4-38-2P0DP08 117 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 UBE2E1P51965 193 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 EBI3Q14213 229 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 MAP1LC3CQ9BXW4 147 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 AP5S1Q9NUS5 200 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 SMAD5-AS1Q9Y6J3 95 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 SMAD7O15105 426 aaKnown RBP8.27□□□□□ -1.09
CUX1-205ENST00000425244 OR5AL1P0C617 328 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 AMN1Q8IY45 258 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 WFDC11Q8NEX6 87 aa8.27□□□□□ -1.09
CUX1-205ENST00000425244 BEX4Q9NWD9 120 aaPredicted RBP8.27□□□□□ -1.09
CUX1-205ENST00000425244 MYO9AB2RTY4 2548 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 LINC01548A6NM66 108 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 D6R8Y8 96 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 AVPP01185 164 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 PAX8Q06710 450 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 Q6AWC8 147 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 TMEM190Q8WZ59 177 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 PRR25Q96S07 402 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 NPFFO15130 113 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 ZNF207O43670 478 aaKnown RBP8.26□□□□□ -1.09
CUX1-205ENST00000425244 CLEC19AQ6UXS0 136 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 RNF182Q8N6D2 247 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 TMEM191AQ9H0A3 160 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 HSPB8Q9UJY1 196 aa8.26□□□□□ -1.09
CUX1-205ENST00000425244 A0A1B0GW15 77 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 ORM1P02763 201 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 IFI27P40305 119 aaPredicted RBP8.25□□□□□ -1.09
CUX1-205ENST00000425244 ZNF80P51504 273 aaPredicted RBP8.25□□□□□ -1.09
CUX1-205ENST00000425244 ERCC8Q13216 396 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 TMEM219Q86XT9 240 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 CR1P17927 2039 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 SAP30O75446 220 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 TWIST1Q15672 202 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 FAM106AQ4KMX7 169 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 FAM110DQ8TAY7 271 aaPredicted RBP8.25□□□□□ -1.09
CUX1-205ENST00000425244 ZNF502Q8TBZ5 544 aa8.25□□□□□ -1.09
CUX1-205ENST00000425244 PRAC2D3DTV9 90 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 SMKR1H3BMG3 65 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 CRXO43186 299 aaPredicted RBP8.24□□□□□ -1.09
CUX1-205ENST00000425244 SCGB1A1P11684 91 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 FXYD7P58549 80 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 LINC01356Q8N9X3 169 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 AJUBAQ96IF1 538 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 MRPS16Q9Y3D3 137 aaKnown RBP8.24□□□□□ -1.09
CUX1-205ENST00000425244 IGHG4P01861 327 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 LOXL1Q08397 574 aaPredicted RBP8.24□□□□□ -1.09
CUX1-205ENST00000425244 PRELID3AQ96N28 172 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 LINC00527Q9UJ94 153 aa8.24□□□□□ -1.09
CUX1-205ENST00000425244 A0A096LNT2 108 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 IGHV1-69DA0A0B4J2H0 117 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 GAGE12BA1L429 117 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 NCR2O95944 276 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 IGHV1-69P01742 117 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 FER1L6-AS1Q8NA97 138 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 OR8A1Q8NGG7 326 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 ZNF479Q96JC4 524 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 ATP6V0BQ99437 205 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 G3V4G9 280 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 CRYBA4P53673 196 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 FAM104BQ5XKR9 115 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 PET117Q6UWS5 81 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 OR10AG1Q8NH19 301 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 ST20Q9HBF5 79 aa8.23□□□□□ -1.09
CUX1-205ENST00000425244 PPIFP30405 207 aaKnown RBP8.22□□□□□ -1.09
CUX1-205ENST00000425244 ERASQ7Z444 233 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 KRTAP1-3Q8IUG1 177 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 ORMDL3Q8N138 153 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 CCDC140Q96MF4 163 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 SIGLEC8Q9NYZ4 499 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 NF1P21359 2839 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 TRAV26-1A0A087WT03 109 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 BUB3O43684 328 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 CKS2P33552 79 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 LY6EQ16553 131 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 MRPL51Q4U2R6 128 aaKnown RBP8.22□□□□□ -1.09
CUX1-205ENST00000425244 ZNF493Q6ZR52 646 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 LRRC75A-AS1Q8N1F1 130 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 GATD1Q8NB37 220 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 ZFAND3Q9H8U3 227 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 MSRB1Q9NZV6 116 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 OTOGQ6ZRI0 2925 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 IGHV4-31P0DP07 118 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 TCTAP57738 103 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 IL17RELQ6ZVW7 336 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 ZNF747Q9BV97 191 aa8.22□□□□□ -1.09
CUX1-205ENST00000425244 SLC25A34Q6PIV7 304 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms