RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TMEM200BQ69YZ2 307 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 MRPL51Q4U2R6 128 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 ZNF492Q9P255 531 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 TRAV3A0A0B4J244 114 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 E9PQ18 207 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 C9JQL5 133 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 TRAV26-2A0A0B4J265 109 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 ZNF134P52741 427 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 CTHRC1Q96CG8 243 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 SHANK2-AS3Q9BTD1 123 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 ICOSQ9Y6W8 199 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 GLI3P10071 1580 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 H0Y9J4 135 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 NDUFB8O95169 186 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 SPINK13Q1W4C9 94 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 IGKV2D-24A0A075B6R9 120 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 PSPNO60542 156 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 KLK9Q9UKQ9 250 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 BUB3O43684 328 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 FOXE3Q13461 319 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 OPRPNQ99935 248 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 MRPS18CQ9Y3D5 142 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 C1QCP02747 245 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 RSPO4Q2I0M5 234 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 XCL2Q9UBD3 114 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 AMTNQ6UX39 209 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 DYNAPQ8N1N2 210 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 WBP1Q96G27 269 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 ZMAT4Q9H898 229 aa10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 MRPL36Q9P0J6 103 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-204ENST00000413716 TMEM213A2RRL7 107 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 H0YGX0 51 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 BUB1B-PAK6H3BSN5 160 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 CXCL5P42830 114 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 H3BUX3 64 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 ZNRF2Q8NHG8 242 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 MRPL35Q9NZE8 188 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 CFC1BP0CG36 223 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 CFC1P0CG37 223 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 H0YIZ8 118 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 CRYGBP07316 175 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 SAP25Q8TEE9 199 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 IGF2BP2-AS1Q96M15 143 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 SLC25A45Q8N413 288 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 K7EMI3 77 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 PAX9P55771 341 aa10.78□□□□□ -0.68
CCDC88A-204ENST00000413716 SMIM27A0A1W2PRY6 76 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 IGKV1-39P01597 117 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 IGKV1D-39P04432 117 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 C20orf204Q6ZNR8 217 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 C3orf22Q8N5N4 141 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 TMEM14EPQ6UXP3 125 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 B4DSR2 109 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 USP17L23D6RBM5 183 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 CR1LQ2VPA4 569 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 Q9H8V8 135 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 GATA4P43694 442 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 IGHV3-38A0A0C4DH36 116 aa10.77□□□□□ -0.69
CCDC88A-204ENST00000413716 TRBV12-3P01733 135 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 IGFL4Q6B9Z1 124 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 IGHV4OR15-8A0A075B7B6 117 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 A0A087WW49 117 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 KIR2DL5BA0A0G2JN68 375 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 KIR2DL5BA0A0G2JPC4 375 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 NDUFC2-KCTD14E9PQ53 114 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 DEFB131AP59861 70 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 KIR2DL5AQ8N109 375 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 SIGLEC8Q9NYZ4 499 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 RHOHQ15669 191 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 SIGLEC9Q9Y336 463 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 UBE2AP49459 152 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 ATG2AQ2TAZ0 1938 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 IGHV2-70P01814 119 aa10.76□□□□□ -0.69
CCDC88A-204ENST00000413716 C20orf78Q9BR46 151 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 CCL25O15444 150 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 Q6ZWC4 215 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 WISP3O95389 354 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 NRXN2Q9P2S2 1712 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 NTF4P34130 210 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 C10orf55Q5SWW7 151 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 LINC01619G3V211 115 aa10.75□□□□□ -0.69
CCDC88A-204ENST00000413716 LTAP01374 205 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 TMEM61Q8N0U2 210 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 RNASE13Q5GAN3 156 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 JMJD7-PLA2G4BH0Y9G9 81 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 TEN1Q86WV5 123 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 ZFP36L1Q07352 338 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 DKK2Q9UBU2 259 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 TECTAO75443 2155 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 LINC01356Q8N9X3 169 aa10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 WIPF2Q8TF74 440 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-204ENST00000413716 C9orf106Q8NAJ2 232 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 TRBV19A0A075B6N1 114 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGHV1-46P01743 117 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGLV3-21P80748 117 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 SEM1Q6ZVN7 128 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 REG4Q9BYZ8 158 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 IGKV1OR2-108A0A075B7D4 117 aa10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 ATP5EP56381 51 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-204ENST00000413716 C5orf67F2Z3F1 127 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms