RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 NSUN5P1Q3KNT7 163 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 C10orf91Q5T1B1 145 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 C3orf56Q8N813 242 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 MRPL18Q9H0U6 180 aaKnown RBP6.78□□□□□ -1.32
SYNE1-211ENST00000413186 OTORQ9NRC9 128 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 ARFGEF3Q5TH69 2177 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 IGKV3D-20A0A0C4DH25 116 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 IGHV4-31P0DP07 118 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 PAX9P55771 341 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 MIR17HGQ75NE6 70 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 C18orf15Q96N68 181 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 TRAV12-1A0A0B4J245 112 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 CBLN1P23435 193 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 SRSF1Q07955 248 aaKnown RBP eCLIP6.78□□□□□ -1.32
SYNE1-211ENST00000413186 C2orf82Q6UX34 121 aa6.78□□□□□ -1.32
SYNE1-211ENST00000413186 NAA38Q9BRA0 125 aaKnown RBP6.78□□□□□ -1.32
SYNE1-211ENST00000413186 ATP5G3P48201 142 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 YPEL3P61236 119 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-211ENST00000413186 PPDPFLQ8WWR9 84 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 C14orf132Q9NPU4 83 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 EPDR1Q9UM22 224 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 IGHV3OR16-8A0A075B7F1 116 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 KNCNA6PVL3 124 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 COLCA2A8K830 154 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 G3V318 75 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 WT1-ASQ06250 92 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 LYPD6BQ8NI32 183 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 ZNF414Q96IQ9 312 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 KIR2DL4Q99706 377 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 TPSG1Q9NRR2 321 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 SVEP1Q4LDE5 3571 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 SCO2A0A1W2PP80 73 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 GAGE12HA6NDE8 117 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 ODF3BA8MYP8 253 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 FOXL1Q12952 345 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 LCNL1Q6ZST4 164 aa6.77□□□□□ -1.33
SYNE1-211ENST00000413186 BSNQ9UPA5 3926 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 NDUFB8O95169 186 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 IGHV3-66A0A0C4DH42 116 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 DUSP14O95147 198 aaKnown RBP6.76□□□□□ -1.33
SYNE1-211ENST00000413186 FAM74A4Q5TZK3 123 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 CD300EQ496F6 205 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-211ENST00000413186 ODF3L1Q8IXM7 274 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 TMEM170AQ8WVE7 144 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 VSIRQ9H7M9 311 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 LAMTOR2Q9Y2Q5 125 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 VPS13CQ709C8 3753 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 CGB1A6NKQ9 187 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 ANKRD39Q53RE8 183 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 HIST2H2BCQ6DN03 193 aa6.76□□□□□ -1.33
SYNE1-211ENST00000413186 CIARTQ8N365 385 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-211ENST00000413186 DLX4Q92988 240 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-211ENST00000413186 DAZ1Q9NQZ3 744 aaKnown RBP6.76□□□□□ -1.33
SYNE1-211ENST00000413186 GPX1P07203 203 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 SERTAD4-AS1Q5TG53 156 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 WFDC12Q8WWY7 111 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 SLC25A39Q9BZJ4 359 aaPredicted RBP6.75□□□□□ -1.33
SYNE1-211ENST00000413186 TRAV23DV6A0A075B6W5 121 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 hADV29S1A0JD25 119 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 PGPEP1LA6NFU8 196 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 TCRAP04437 139 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 SIGLEC15Q6ZMC9 328 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 ZNF295-AS1Q8N0V1 137 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 IZUMO1RA6ND01 250 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 UBE2CO00762 179 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 NDUFA3O95167 84 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 IFITM1P13164 125 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 Q8N9W7 124 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 Q9H3A6 140 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 IGLC7A0M8Q6 106 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 RS1O15537 224 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 PLNP26678 52 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 TCF24Q7RTU0 167 aa6.75□□□□□ -1.33
SYNE1-211ENST00000413186 IGHV7-81A0A0B4J1V7 117 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 A0A1W2PPR1 153 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 PSMG4Q5JS54 123 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 LYPD1Q8N2G4 141 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 SCGB3A1Q96QR1 104 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 ERG28Q9UKR5 140 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 USP9YO00507 2555 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-211ENST00000413186 TRAV8-3A0A0A6YYJ7 113 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 LINC01619G3V211 115 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 H3BRM9 83 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 ZNF138P52744 262 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 C9orf139Q6ZV77 190 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 GTSCR1Q86UQ5 136 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 C5orf56Q8N8D9 126 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 TMEM243Q9BU79 118 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 CHAC1Q9BUX1 264 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 RPP21Q9H633 154 aaKnown RBP6.74□□□□□ -1.33
SYNE1-211ENST00000413186 PRRC2AP48634 2157 aaKnown RBP6.74□□□□□ -1.33
SYNE1-211ENST00000413186 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-211ENST00000413186 OVOL1O14753 267 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 SAP30O75446 220 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 CD33P20138 364 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 FOXE3Q13461 319 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 DNAJC30Q96LL9 226 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 PRDM13Q9H4Q3 707 aa6.74□□□□□ -1.33
SYNE1-211ENST00000413186 TMEM89A2RUT3 159 aa6.73□□□□□ -1.33
SYNE1-211ENST00000413186 M0R2P5 195 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms