RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ZNF738Q8NE65 137 aa15.29■□□□□ 0.04
USP39-204ENST00000409766 K7EMT4 169 aa15.28■□□□□ 0.04
USP39-204ENST00000409766 DMRTA1Q5VZB9 504 aa15.28■□□□□ 0.04
USP39-204ENST00000409766 FAM104BQ5XKR9 115 aa15.28■□□□□ 0.04
USP39-204ENST00000409766 REC114Q7Z4M0 266 aa15.28■□□□□ 0.04
USP39-204ENST00000409766 CNFNQ9BYD5 112 aa15.28■□□□□ 0.04
USP39-204ENST00000409766 FAM106AQ4KMX7 169 aa15.27■□□□□ 0.04
USP39-204ENST00000409766 C11orf21Q9P2W6 132 aa15.27■□□□□ 0.04
USP39-204ENST00000409766 SMPXQ9UHP9 88 aa15.27■□□□□ 0.04
USP39-204ENST00000409766 IGKV3D-20A0A0C4DH25 116 aa15.27■□□□□ 0.03
USP39-204ENST00000409766 EBLN2Q6P2I7 272 aa15.27■□□□□ 0.03
USP39-204ENST00000409766 LENEPQ9Y5L5 61 aa15.27■□□□□ 0.03
USP39-204ENST00000409766 NBPF19A0A087WUL8 3843 aa15.27■□□□□ 0.03
USP39-204ENST00000409766 IGHV1-24A0A0C4DH33 117 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 HOXA3O43365 443 aaPredicted RBP15.26■□□□□ 0.03
USP39-204ENST00000409766 RPL11P62913 178 aaKnown RBP15.26■□□□□ 0.03
USP39-204ENST00000409766 TWIST1Q15672 202 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 CYB5R2Q6BCY4 276 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 AMN1Q8IY45 258 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 NDUFAF3Q9BU61 184 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 ZNF702PQ9H963 129 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 U3KQK5 164 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 C2orf70A6NJV1 201 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 PMCHL1Q16048 86 aa15.26■□□□□ 0.03
USP39-204ENST00000409766 ZNF469Q96JG9 3925 aaPredicted RBP15.25■□□□□ 0.03
USP39-204ENST00000409766 OVOL1O14753 267 aa15.25■□□□□ 0.03
USP39-204ENST00000409766 RPLP1P05386 114 aaKnown RBP15.25■□□□□ 0.03
USP39-204ENST00000409766 LINC00477Q96M19 166 aa15.25■□□□□ 0.03
USP39-204ENST00000409766 VAMP8Q9BV40 100 aa15.25■□□□□ 0.03
USP39-204ENST00000409766 DOPEY2Q9Y3R5 2298 aa15.25■□□□□ 0.03
USP39-204ENST00000409766 EDN2P20800 178 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 HIST2H2BCQ6DN03 193 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 C20orf144Q9BQM9 153 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 D6R8Y8 96 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 CSN3P07498 182 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 FOXE3Q13461 319 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 PAM16Q9Y3D7 125 aa15.24■□□□□ 0.03
USP39-204ENST00000409766 BTF3P20290 206 aaKnown RBP15.23■□□□□ 0.03
USP39-204ENST00000409766 OR10J6PQ8NGY7 276 aa15.23■□□□□ 0.03
USP39-204ENST00000409766 MYOZ3Q8TDC0 251 aa15.23■□□□□ 0.03
USP39-204ENST00000409766 TMEM191AQ9H0A3 160 aa15.23■□□□□ 0.03
USP39-204ENST00000409766 MSRB1Q9NZV6 116 aa15.23■□□□□ 0.03
USP39-204ENST00000409766 MRPL51Q4U2R6 128 aaKnown RBP15.22■□□□□ 0.03
USP39-204ENST00000409766 PRR9Q5T870 116 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 Q6ZQT7 251 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 UFC1Q9Y3C8 167 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 HELZ2Q9BYK8 2649 aaKnown RBP15.22■□□□□ 0.03
USP39-204ENST00000409766 IGKV3-7A0A075B6H7 116 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 RAB4AP20338 218 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 DEFB1P60022 68 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 ORMDL3Q8N138 153 aa15.22■□□□□ 0.03
USP39-204ENST00000409766 ELANEP08246 267 aa15.21■□□□□ 0.03
USP39-204ENST00000409766 ZFAND2AQ8N6M9 145 aa15.21■□□□□ 0.03
USP39-204ENST00000409766 SELENOKQ9Y6D0 94 aa15.21■□□□□ 0.03
USP39-204ENST00000409766 PRELID3AQ96N28 172 aa15.21■□□□□ 0.02
USP39-204ENST00000409766 ITPR3Q14573 2671 aa15.2■□□□□ 0.02
USP39-204ENST00000409766 LEPROTL1O95214 131 aa15.2■□□□□ 0.02
USP39-204ENST00000409766 OR5AL1P0C617 328 aa15.2■□□□□ 0.02
USP39-204ENST00000409766 FAM19A4Q96LR4 140 aa15.2■□□□□ 0.02
USP39-204ENST00000409766 AP5S1Q9NUS5 200 aa15.2■□□□□ 0.02
USP39-204ENST00000409766 LGALS1P09382 135 aaKnown RBP15.19■□□□□ 0.02
USP39-204ENST00000409766 SRD5A1P18405 259 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 RNF152Q8N8N0 203 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 OR8A1Q8NGG7 326 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 PRSS3P2Q8NHM4 247 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 TMEM70Q9BUB7 260 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 F6UB75 175 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 CRXO43186 299 aaPredicted RBP15.19■□□□□ 0.02
USP39-204ENST00000409766 LINC00173Q6ZV60 143 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 DCANP1Q8TF63 244 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 RNF185Q96GF1 192 aa15.19■□□□□ 0.02
USP39-204ENST00000409766 UBE2E2Q96LR5 201 aa15.18■□□□□ 0.02
USP39-204ENST00000409766 CKS2P33552 79 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 IFI27P40305 119 aaPredicted RBP15.17■□□□□ 0.02
USP39-204ENST00000409766 FA2HQ7L5A8 372 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 SPATA12Q7Z6I5 190 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 Q8N2B8 174 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 WFDC11Q8NEX6 87 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 SIGLEC8Q9NYZ4 499 aa15.17■□□□□ 0.02
USP39-204ENST00000409766 TRBV7-9A0A0J9YWB2 115 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 SAMD13Q5VXD3 122 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 APRG1Q8IVJ8 170 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 OR10AG1Q8NH19 301 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 DUX5Q96PT3 197 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 MIEN1Q9BRT3 115 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 SMKR1H3BMG3 65 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 SYS1-DBNDD2H3BUS1 97 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 J3KRW8 73 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 SNAI2O43623 268 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 SPATA45Q537H7 98 aa15.16■□□□□ 0.02
USP39-204ENST00000409766 IGHV4OR15-8A0A075B7B6 117 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 A0A087WW49 117 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 TRAV21A0A0B4J279 112 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 LOC389332A0A1B0GUA5 103 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 LGALS9O00182 355 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 NPYP01303 97 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 ID1P41134 155 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 ATOH7Q8N100 152 aa15.15■□□□□ 0.02
USP39-204ENST00000409766 IGHV4-4A0A075B6R2 117 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 PPBPP02775 128 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms