RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 C1orf194Q5T5A4 169 aa10.16□□□□□ -0.78
LIMS1-204ENST00000409441 CDPF1Q6NVV7 123 aa10.16□□□□□ -0.78
LIMS1-204ENST00000409441 COX8CQ7Z4L0 72 aa10.16□□□□□ -0.78
LIMS1-204ENST00000409441 OR9G4Q8NGQ1 327 aa10.16□□□□□ -0.78
LIMS1-204ENST00000409441 UFC1Q9Y3C8 167 aa10.16□□□□□ -0.78
LIMS1-204ENST00000409441 K7EMT4 169 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 ZNF207O43670 478 aaKnown RBP10.15□□□□□ -0.78
LIMS1-204ENST00000409441 NUPR1O60356 82 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 FOXA3P55318 350 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-204ENST00000409441 TCF24Q7RTU0 167 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 ZC2HC1AQ96GY0 325 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 PEMTQ9UBM1 199 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 SMAD5-AS1Q9Y6J3 95 aa10.15□□□□□ -0.78
LIMS1-204ENST00000409441 M0R3E3 92 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 BUB3O43684 328 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 CD33P20138 364 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 SRIP30626 198 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 IQCJQ1A5X6 159 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 SAPCD1Q5SSQ6 148 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 OR2D3Q8NGH3 330 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 GTSF1Q8WW33 167 aa10.15□□□□□ -0.79
LIMS1-204ENST00000409441 TMEM213A2RRL7 107 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 A8MWP6 167 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 LINC00587B1AMM8 73 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 CT45A10P0DMU9 189 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 PKIAP61925 76 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 SLAQ13239 276 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 KIAA1644Q3SXP7 199 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 GDF5OSQ5U4N7 250 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 Q6AWC8 147 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 METTL26Q96S19 204 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 SLC50A1Q9BRV3 221 aa10.14□□□□□ -0.79
LIMS1-204ENST00000409441 DAZ1Q9NQZ3 744 aaKnown RBP10.14□□□□□ -0.79
LIMS1-204ENST00000409441 C2orf70A6NJV1 201 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 ZNF785A8K8V0 405 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 CHEK1O14757 476 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 CSN3P07498 182 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 EDN2P20800 178 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 PRR31Q5SQ13 230 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 KCNS1Q96KK3 526 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 U3KQE9 123 aa10.13□□□□□ -0.79
LIMS1-204ENST00000409441 IGHV3-49A0A0A0MS15 119 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 A0A1B0GW15 77 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 TSTD3H0UI37 97 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 FAM162BQ5T6X4 162 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 ADAMTSL5Q6ZMM2 481 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 PGLYRP4Q96LB8 373 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 SAMD10Q9BYL1 202 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 SMPXQ9UHP9 88 aa10.12□□□□□ -0.79
LIMS1-204ENST00000409441 IGHV7-4-1A0A0J9YVY3 117 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 RBAKDNA6NC62 111 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 F2Z2F3 143 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 APOHP02749 345 aaPredicted RBP10.11□□□□□ -0.79
LIMS1-204ENST00000409441 CAMPP49913 170 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 GATD1Q8NB37 220 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 C18orf32Q8TCD1 76 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 MRPL53Q96EL3 112 aaKnown RBP10.11□□□□□ -0.79
LIMS1-204ENST00000409441 MCRIP2Q9BUT9 160 aaKnown RBP10.11□□□□□ -0.79
LIMS1-204ENST00000409441 CLEC5AQ9NY25 188 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 TRRAPQ9Y4A5 3859 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 IGHV3OR16-13A0A075B7E8 117 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 IGHV3-74A0A0B4J1X5 117 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 SAP30O75446 220 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 GPX1P07203 203 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 IGLL1P15814 213 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 CTAG1AP78358 180 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 RIGQ13278 110 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 PRR25Q96S07 402 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 ALKBH7Q9BT30 221 aaPredicted RBP10.11□□□□□ -0.79
LIMS1-204ENST00000409441 RHPN1-AS1Q9BWJ2 59 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 SIGLEC8Q9NYZ4 499 aa10.11□□□□□ -0.79
LIMS1-204ENST00000409441 ANK2Q01484 3957 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 IGKV2-40A0A087WW87 121 aaPredicted RBP10.1□□□□□ -0.79
LIMS1-204ENST00000409441 IGHV3-66A0A0C4DH42 116 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 IGKV2D-40P01614 121 aaPredicted RBP10.1□□□□□ -0.79
LIMS1-204ENST00000409441 CRIP1P50238 77 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 RPS20P60866 119 aaKnown RBP10.1□□□□□ -0.79
LIMS1-204ENST00000409441 LCN12Q6JVE5 192 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 NDFIP1Q9BT67 221 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 NAGKQ9UJ70 344 aa10.1□□□□□ -0.79
LIMS1-204ENST00000409441 PKD1L1Q8TDX9 2849 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 A0A1B0GUT8 65 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 A0A1W2PS18 150 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 SCGB1D1O95968 90 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 BMI1P35226 326 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 C9orf66Q5T8R8 295 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 Q6ZWC4 215 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 BORCS7Q96B45 105 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 C8orf49Q96NF6 230 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 SELENOKQ9Y6D0 94 aa10.09□□□□□ -0.79
LIMS1-204ENST00000409441 SH2D1AO60880 128 aa10.08□□□□□ -0.8
LIMS1-204ENST00000409441 ZNF324O75467 553 aaPredicted RBP10.08□□□□□ -0.8
LIMS1-204ENST00000409441 INSL3P51460 131 aa10.08□□□□□ -0.8
LIMS1-204ENST00000409441 DEFB114Q30KQ6 69 aa10.08□□□□□ -0.8
LIMS1-204ENST00000409441 SSBP4Q9BWG4 385 aaPredicted RBP10.08□□□□□ -0.8
LIMS1-204ENST00000409441 NOTCH3Q9UM47 2321 aa10.08□□□□□ -0.8
LIMS1-204ENST00000409441 TMEM189A5PLL7 270 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 AMTP48728 403 aa10.07□□□□□ -0.8
LIMS1-204ENST00000409441 OXLD1Q5BKU9 147 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms