RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NDUFA3O95167 84 aa16.19■□□□□ 0.18
CTCF-202ENST00000401394 NEGR1Q7Z3B1 354 aa16.19■□□□□ 0.18
CTCF-202ENST00000401394 FCER1GP30273 86 aa16.19■□□□□ 0.18
CTCF-202ENST00000401394 CSMD2Q7Z408 3487 aa16.19■□□□□ 0.18
CTCF-202ENST00000401394 CRYBG3Q68DQ2 2970 aa16.19■□□□□ 0.18
CTCF-202ENST00000401394 B9A039 149 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 LINC00527Q9UJ94 153 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 G3V318 75 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 CLEC3BP05452 202 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 RPL7P18124 248 aaKnown RBP16.18■□□□□ 0.18
CTCF-202ENST00000401394 PDE6HQ13956 83 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 SFTA2Q6UW10 78 aa16.18■□□□□ 0.18
CTCF-202ENST00000401394 SMIM13P0DJ93 91 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 FABP2P12104 132 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 WFDC2Q14508 124 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 OR4X2Q8NGF9 303 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 SH2D6Q7Z4S9 175 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 IGKCP01834 107 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 GTSF1LQ9H1H1 148 aa16.17■□□□□ 0.18
CTCF-202ENST00000401394 SPG11Q96JI7 2443 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 SMIM17P0DL12 118 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 C15orf32Q32M92 178 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 AGPAT4-IT1Q9H0P7 198 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 DPF1Q92782 380 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 RAB1BQ9H0U4 201 aa16.16■□□□□ 0.18
CTCF-202ENST00000401394 FABP5P3A8MUU1 101 aa16.15■□□□□ 0.18
CTCF-202ENST00000401394 NBL1P41271 181 aa16.15■□□□□ 0.18
CTCF-202ENST00000401394 IGHV7-81A0A0B4J1V7 117 aa16.14■□□□□ 0.17
CTCF-202ENST00000401394 H3BMG7 143 aa16.14■□□□□ 0.17
CTCF-202ENST00000401394 NPBQ8NG41 125 aa16.14■□□□□ 0.17
CTCF-202ENST00000401394 PHLDA1Q8WV24 401 aaPredicted RBP16.14■□□□□ 0.17
CTCF-202ENST00000401394 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.14■□□□□ 0.17
CTCF-202ENST00000401394 CLEC19AQ6UXS0 136 aa16.14■□□□□ 0.17
CTCF-202ENST00000401394 ZFP36P26651 326 aaKnown RBP16.14■□□□□ 0.17
CTCF-202ENST00000401394 BMI1P35226 326 aa16.14■□□□□ 0.17
CTCF-202ENST00000401394 COL25A1Q9BXS0 654 aaPredicted RBP16.13■□□□□ 0.17
CTCF-202ENST00000401394 NCOR2Q9Y618 2525 aa16.13■□□□□ 0.17
CTCF-202ENST00000401394 INSL3P51460 131 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 PRR9Q5T870 116 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 VMO1Q7Z5L0 202 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 IGLV2-18A0A075B6J9 118 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 ZMAT4Q9H898 229 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 CHD8Q9HCK8 2581 aa16.12■□□□□ 0.17
CTCF-202ENST00000401394 TTC9CQ8N5M4 171 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 LY6G5BQ8NDX9 201 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 SIVA1O15304 175 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 OR11H6Q8NGC7 330 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 H3BVH4 76 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 SMAGPQ0VAQ4 97 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 RNF5Q99942 180 aa16.11■□□□□ 0.17
CTCF-202ENST00000401394 IGKV3-7A0A075B6H7 116 aa16.1■□□□□ 0.17
CTCF-202ENST00000401394 CLPSL1A2RUU4 121 aa16.1■□□□□ 0.17
CTCF-202ENST00000401394 BUB3O43684 328 aa16.1■□□□□ 0.17
CTCF-202ENST00000401394 DPM2O94777 84 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 ETDBQ3ZM63 59 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 MSRB2Q9Y3D2 182 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 CELSR2Q9HCU4 2923 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 TRAV8-2A0A0B4J237 113 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 CEND1Q8N111 149 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 NRACQ8N912 160 aa16.09■□□□□ 0.17
CTCF-202ENST00000401394 IGHV7-4-1A0A0J9YVY3 117 aa16.08■□□□□ 0.17
CTCF-202ENST00000401394 ATP6V0E1O15342 81 aa16.08■□□□□ 0.17
CTCF-202ENST00000401394 IGHV3OR16-10A0A075B7F0 116 aa16.08■□□□□ 0.16
CTCF-202ENST00000401394 SRSF8Q9BRL6 282 aaKnown RBP16.08■□□□□ 0.16
CTCF-202ENST00000401394 ODF3BA8MYP8 253 aa16.08■□□□□ 0.16
CTCF-202ENST00000401394 EMP1P54849 157 aa16.08■□□□□ 0.16
CTCF-202ENST00000401394 ZFAND3Q9H8U3 227 aa16.08■□□□□ 0.16
CTCF-202ENST00000401394 SORL1Q92673 2214 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 M0R381 172 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 CCL21O00585 134 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 RPL39LQ96EH5 51 aaKnown RBP16.07■□□□□ 0.16
CTCF-202ENST00000401394 CCDC140Q96MF4 163 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 COX8CQ7Z4L0 72 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 Q8N9W7 124 aa16.07■□□□□ 0.16
CTCF-202ENST00000401394 TSSC4Q9Y5U2 329 aaPredicted RBP16.07■□□□□ 0.16
CTCF-202ENST00000401394 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.07■□□□□ 0.163e-6■■■□□ 18.9
CTCF-202ENST00000401394 IGLL5B9A064 214 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 SPANXN1Q5VSR9 72 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 NXT2Q9NPJ8 142 aaKnown RBP16.06■□□□□ 0.16
CTCF-202ENST00000401394 CEACAM3P40198 252 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 Q8N8P6 123 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 GLMPQ8WWB7 406 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 CNFNQ9BYD5 112 aa16.06■□□□□ 0.16
CTCF-202ENST00000401394 AZU1P20160 251 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 PRTN3P24158 256 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 LINC01559Q495D7 138 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 TMEM219Q86XT9 240 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 OR5A1Q8NGJ0 315 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 WFDC12Q8WWY7 111 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 SPOCK3Q9BQ16 436 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 CYSLTR1Q9Y271 337 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 HIST1H4GQ99525 98 aa16.05■□□□□ 0.16
CTCF-202ENST00000401394 S100A7AQ86SG5 101 aa16.04■□□□□ 0.16
CTCF-202ENST00000401394 C12orf74Q32Q52 190 aa16.04■□□□□ 0.16
CTCF-202ENST00000401394 ZNF502Q8TBZ5 544 aa16.04■□□□□ 0.16
CTCF-202ENST00000401394 C20orf173Q96LM9 149 aa16.04■□□□□ 0.16
CTCF-202ENST00000401394 HIVEP3Q5T1R4 2406 aa16.04■□□□□ 0.16
CTCF-202ENST00000401394 F6UB75 175 aa16.03■□□□□ 0.16
CTCF-202ENST00000401394 ATP5G2Q06055 141 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms