RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 IGKV3D-20A0A0C4DH25 116 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 RPL32P62910 135 aaKnown RBP7.36□□□□□ -1.23
COL28A1-201ENST00000399429 GAFA1Q96PS6 74 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 AGRNO00468 2067 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 IGHV1-46P01743 117 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 FAM27E3Q08E93 113 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 ATG2AQ2TAZ0 1938 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 TTC28Q96AY4 2481 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 FOXC1Q12948 553 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 EIF4EBP1Q13541 118 aaPredicted RBP7.36□□□□□ -1.23
COL28A1-201ENST00000399429 RNF182Q8N6D2 247 aa7.36□□□□□ -1.23
COL28A1-201ENST00000399429 CCDC179H3BU77 68 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 SPRY2O43597 315 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 PPP1R17O96001 155 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 RNASE4P34096 147 aaKnown RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 SHISA9B4DS77 424 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 IGKV3-20P01619 116 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 HLA-DMBP28068 263 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 SUMO2P61956 95 aaKnown RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 CIRBPQ14011 172 aaKnown RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 ATP6V0E2Q8NHE4 81 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 SS18L1O75177 396 aaPredicted RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 C1orf229Q6ZS94 237 aaPredicted RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 TRPT1Q86TN4 253 aaKnown RBP7.35□□□□□ -1.23
COL28A1-201ENST00000399429 TCL1BO95988 128 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 DNAL4O96015 105 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 C2orf16Q68DN1 1984 aa7.35□□□□□ -1.23
COL28A1-201ENST00000399429 C5orf64Q2M2E5 130 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 C1orf162Q8NEQ5 155 aaPredicted RBP7.34□□□□□ -1.23
COL28A1-201ENST00000399429 LTBRP36941 435 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 TMEM14CQ9P0S9 112 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 TIMM23O14925 209 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 CLEC19AQ6UXS0 136 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 SMIM2Q9BVW6 85 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 TP53TG1Q9Y2A0 90 aa7.34□□□□□ -1.23
COL28A1-201ENST00000399429 C2CD3Q4AC94 2353 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 RS1O15537 224 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 CFC1BP0CG36 223 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 CFC1P0CG37 223 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 PDE6HQ13956 83 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 GAGE2AQ6NT46 116 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 SIGLEC15Q6ZMC9 328 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 DEFB124Q8NES8 71 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 C16orf97H3BN30 126 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 FAM57AQ8TBR7 257 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 SPXQ9BT56 116 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 ZNF71Q9NQZ8 489 aaPredicted RBP7.33□□□□□ -1.24
COL28A1-201ENST00000399429 IGKV1D-37A0A075B6S9 117 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 RNASE1P07998 156 aaKnown RBP7.33□□□□□ -1.24
COL28A1-201ENST00000399429 LGALS1P09382 135 aaKnown RBP7.33□□□□□ -1.24
COL28A1-201ENST00000399429 SPRNQ5BIV9 151 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 ZNF833PQ6ZTB9 187 aa7.33□□□□□ -1.24
COL28A1-201ENST00000399429 FAM236AA0A1B0GUQ0 79 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 FAM236BA0A1B0GV22 79 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 NBR2O15453 112 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 CHCHD5Q9BSY4 110 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 IGHV1-3A0A0C4DH29 117 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 ADARB2-AS1A8MUL3 147 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 K7EM74 188 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 DPH3P1Q9H4G8 78 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 TRAV4A0A0B4J268 109 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 A4D1N5 150 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 C17orf100A8MU93 164 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 IGHV1-8P0DP01 117 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 C1orf210Q8IVY1 113 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 DUX3Q96PT4 197 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 SLC50A1Q9BRV3 221 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 H3BRN7 92 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 CFAP126Q5VTH2 177 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 ZNF491Q8N8L2 437 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 CARD19Q96LW7 228 aa7.32□□□□□ -1.24
COL28A1-201ENST00000399429 LYNX1G3V0Z9 82 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 TRGV3P03979 118 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 LYNX1P0DP58 116 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 CR1LQ2VPA4 569 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 LYPD2Q6UXB3 125 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 DPM3Q9P2X0 92 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 MKI67P46013 3256 aaKnown RBP7.31□□□□□ -1.24
COL28A1-201ENST00000399429 J3QQQ9 107 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 ZNF493Q6ZR52 646 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 TMEM105Q8N8V8 129 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 A0A087WWL8 130 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 RITA1Q96K30 269 aa7.31□□□□□ -1.24
COL28A1-201ENST00000399429 TRAV21A0A0B4J279 112 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 NDPQ00604 133 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 FDCSPQ8NFU4 85 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 WNK1Q9H4A3 2382 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 TEX49A0A1B0GTD5 131 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 IGKV1-17P01599 117 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 CD7P09564 240 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 SRD5A1P18405 259 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 LINC01620Q4KN68 170 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 NDUFA11Q86Y39 141 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 Q8N1Y9 231 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 CFHR4Q92496 578 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 CEACAM4O75871 244 aa7.3□□□□□ -1.24
COL28A1-201ENST00000399429 HIST1H4AP62805 103 aaKnown RBP7.3□□□□□ -1.24
COL28A1-201ENST00000399429 SPG11Q96JI7 2443 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 ID1P41134 155 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 CRIP1P50238 77 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms