RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 TREM1Q9NP99 234 aa13.82□□□□□ -0.2
HOXA9-202ENST00000396345 TRAV34A0A0B4J273 112 aa13.81□□□□□ -0.2
HOXA9-202ENST00000396345 C11orf94C9JXX5 98 aa13.81□□□□□ -0.2
HOXA9-202ENST00000396345 ZNF324O75467 553 aaPredicted RBP13.81□□□□□ -0.2
HOXA9-202ENST00000396345 PRNTQ86SH4 94 aa13.81□□□□□ -0.2
HOXA9-202ENST00000396345 TVP23CQ96ET8 276 aa13.81□□□□□ -0.2
HOXA9-202ENST00000396345 IFNA1P01562 189 aa13.8□□□□□ -0.2
HOXA9-202ENST00000396345 EMP1P54849 157 aa13.8□□□□□ -0.2
HOXA9-202ENST00000396345 PYGO2Q9BRQ0 406 aa13.8□□□□□ -0.2
HOXA9-202ENST00000396345 AZU1P20160 251 aa13.79□□□□□ -0.2
HOXA9-202ENST00000396345 PMS2P11Q13670 270 aa13.79□□□□□ -0.2
HOXA9-202ENST00000396345 C11orf45Q8TAV5 145 aa13.79□□□□□ -0.2
HOXA9-202ENST00000396345 KMT2CQ8NEZ4 4911 aaKnown RBP13.78□□□□□ -0.2
HOXA9-202ENST00000396345 AKR1C3P42330 323 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 SAPCD1Q5SSQ6 148 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 Q6AWC8 147 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 TEX261Q6UWH6 196 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 Q6ZQT7 251 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 FMC1Q96HJ9 113 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 C8orf49Q96NF6 230 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 TXNDC17Q9BRA2 123 aa13.78□□□□□ -0.2
HOXA9-202ENST00000396345 SCO2A0A1W2PP80 73 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 CXorf65A6NEN9 183 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 RGS13O14921 159 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 NANOS2P60321 138 aaKnown RBP13.77□□□□□ -0.21
HOXA9-202ENST00000396345 UBE2G1P62253 170 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 ZNF493Q6ZR52 646 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 Q86TA4 180 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 C16orf74Q96GX8 76 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 LINC00467Q9BRT7 94 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 KLF12Q9Y4X4 402 aa13.77□□□□□ -0.21
HOXA9-202ENST00000396345 C3orf84H3BNL1 204 aa13.76□□□□□ -0.21
HOXA9-202ENST00000396345 BCL2P10415 239 aa13.76□□□□□ -0.21
HOXA9-202ENST00000396345 EIF4E3Q8N5X7 224 aaKnown RBP13.76□□□□□ -0.21
HOXA9-202ENST00000396345 ZNF680Q8NEM1 530 aa13.76□□□□□ -0.21
HOXA9-202ENST00000396345 LYPD6BQ8NI32 183 aa13.76□□□□□ -0.21
HOXA9-202ENST00000396345 TMEM263Q8WUH6 116 aaKnown RBP13.76□□□□□ -0.21
HOXA9-202ENST00000396345 CELA1Q9UNI1 258 aa13.76□□□□□ -0.21
HOXA9-202ENST00000396345 IGHV1OR15-1A0A075B7D0 117 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 TRAV21A0A0B4J279 112 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 SPART-AS1P0CW21 52 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 TAGLN2P37802 199 aaKnown RBP13.75□□□□□ -0.21
HOXA9-202ENST00000396345 TMEM183BQ1AE95 376 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 SMUG1Q53HV7 270 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 ZFAND6Q6FIF0 208 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 RNASE8Q8TDE3 154 aaKnown RBP13.75□□□□□ -0.21
HOXA9-202ENST00000396345 C2CD4CQ8TF44 421 aa13.75□□□□□ -0.21
HOXA9-202ENST00000396345 TRBV6-1A0A0K0K1D8 114 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 PLAC8L1A1L4L8 177 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 CBY3A6NI87 242 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 GCGP01275 180 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 S100A9P06702 114 aaKnown RBP13.74□□□□□ -0.21
HOXA9-202ENST00000396345 MEF2BQ02080 365 aaPredicted RBP13.74□□□□□ -0.21
HOXA9-202ENST00000396345 FAM222AQ5U5X8 452 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 DKK2Q9UBU2 259 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 VAX2Q9UIW0 290 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 ZFP30Q9Y2G7 519 aa13.74□□□□□ -0.21
HOXA9-202ENST00000396345 TEX48A0A1B0GUV7 120 aa13.73□□□□□ -0.21
HOXA9-202ENST00000396345 ANXA2RQ3ZCQ2 193 aa13.73□□□□□ -0.21
HOXA9-202ENST00000396345 MUC21Q5SSG8 566 aa13.73□□□□□ -0.21
HOXA9-202ENST00000396345 PDE6DO43924 150 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 LTAP01374 205 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 ZNF80P51504 273 aaPredicted RBP13.72□□□□□ -0.21
HOXA9-202ENST00000396345 C12orf74Q32Q52 190 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 FAM159AQ6UWV7 190 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 C11orf52Q96A22 123 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 NAGKQ9UJ70 344 aa13.72□□□□□ -0.21
HOXA9-202ENST00000396345 TIMM8BQ9Y5J9 83 aaPredicted RBP13.72□□□□□ -0.21
HOXA9-202ENST00000396345 LYRM9A8MSI8 78 aa13.71□□□□□ -0.21
HOXA9-202ENST00000396345 SNURFLB1AK76 121 aa13.71□□□□□ -0.21
HOXA9-202ENST00000396345 PFN1P07737 140 aaKnown RBP13.71□□□□□ -0.21
HOXA9-202ENST00000396345 ZNF767PQ75MW2 155 aa13.71□□□□□ -0.21
HOXA9-202ENST00000396345 TP53TG3Q9ULZ0 132 aa13.71□□□□□ -0.21
HOXA9-202ENST00000396345 RBFOX3A6NFN3 312 aa13.7□□□□□ -0.22
HOXA9-202ENST00000396345 RPL35P42766 123 aaKnown RBP13.7□□□□□ -0.22
HOXA9-202ENST00000396345 CASC10Q5T4H9 136 aa13.7□□□□□ -0.22
HOXA9-202ENST00000396345 PCNPQ8WW12 178 aaKnown RBP13.7□□□□□ -0.22
HOXA9-202ENST00000396345 NOP10Q9NPE3 64 aaKnown RBP13.7□□□□□ -0.22
HOXA9-202ENST00000396345 CSMD3Q7Z407 3707 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 DAD1P61803 113 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 TDRG1Q3Y452 100 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 Q6ZTC4 211 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 COX8CQ7Z4L0 72 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 TMEM183AQ8IXX5 376 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 C11orf72Q8NBR9 251 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 PHLDA1Q8WV24 401 aaPredicted RBP13.69□□□□□ -0.22
HOXA9-202ENST00000396345 ZC2HC1AQ96GY0 325 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 GSN-AS1Q9NRJ2 163 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 MED9Q9NWA0 146 aa13.69□□□□□ -0.22
HOXA9-202ENST00000396345 TRGV11A0A075B6L2 103 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 ZNF506Q5JVG8 444 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 IBA57Q5T440 356 aaKnown RBP13.68□□□□□ -0.22
HOXA9-202ENST00000396345 BAGE2Q86Y30 109 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 NHLRC2Q8NBF2 726 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 KCNS1Q96KK3 526 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 DERL1Q9BUN8 251 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 RYR3Q15413 4870 aa13.68□□□□□ -0.22
HOXA9-202ENST00000396345 NUPR2A6NF83 97 aa13.67□□□□□ -0.22
HOXA9-202ENST00000396345 FABP5P3A8MUU1 101 aa13.67□□□□□ -0.22
HOXA9-202ENST00000396345 DAZ2Q13117 558 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms