RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TEX48A0A1B0GUV7 120 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 C11orf94C9JXX5 98 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 F6UZH7 168 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 CCDC28AQ8IWP9 274 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 C2CD4CQ8TF44 421 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 MBD3L1Q8WWY6 194 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 PYGO2Q9BRQ0 406 aa9.51□□□□□ -0.89
VPS28-202ENST00000377348 HYDINQ4G0P3 5121 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 DEFB131BA0A096LNP1 70 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 IGLL5B9A064 214 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 DEFB130BP0DP73 79 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 DEFB130AP0DP74 79 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 NKX2-5P52952 324 aaPredicted RBP9.5□□□□□ -0.89
VPS28-202ENST00000377348 DAD1P61803 113 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 DPPA3Q6W0C5 159 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 ZNF493Q6ZR52 646 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 SLC51BQ86UW2 128 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 CYB561D1Q8N8Q1 229 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 LINC00479Q96M42 142 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 NOP10Q9NPE3 64 aaKnown RBP9.5□□□□□ -0.89
VPS28-202ENST00000377348 TP53TG3Q9ULZ0 132 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 LENEPQ9Y5L5 61 aa9.5□□□□□ -0.89
VPS28-202ENST00000377348 TRAV34A0A0B4J273 112 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 LCE6AA0A183 80 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 SERTM2A0A1B0GWG4 89 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 CBY3A6NI87 242 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 LYRM9A8MSI8 78 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 RGS13O14921 159 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 IFNA7P01567 189 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 IGLV2-11P01706 119 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 H2AFB1P0C5Y9 115 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 HTN3P15516 51 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 MUC21Q5SSG8 566 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 CST9LP1Q5W188 147 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 Q6AWC8 147 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 EIF4E3Q8N5X7 224 aaKnown RBP9.49□□□□□ -0.89
VPS28-202ENST00000377348 C8orf49Q96NF6 230 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 ATG101Q9BSB4 218 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 TREM1Q9NP99 234 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 PSG8Q9UQ74 426 aa9.49□□□□□ -0.89
VPS28-202ENST00000377348 TIMM8BQ9Y5J9 83 aaPredicted RBP9.49□□□□□ -0.89
VPS28-202ENST00000377348 IGHV1OR15-1A0A075B7D0 117 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 K7EQM0 130 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 PAGE4O60829 102 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 ATP5G3P48201 142 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 SULT1A2P50226 295 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 FLI1Q01543 452 aaPredicted RBP9.48□□□□□ -0.89
VPS28-202ENST00000377348 EIF5AL1Q6IS14 154 aaKnown RBP9.48□□□□□ -0.89
VPS28-202ENST00000377348 PRNTQ86SH4 94 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 LINC00467Q9BRT7 94 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 GSN-AS1Q9NRJ2 163 aa9.48□□□□□ -0.89
VPS28-202ENST00000377348 SNURFLB1AK76 121 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 PEX7O00628 323 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 CCL20P78556 96 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 ANXA2RQ3ZCQ2 193 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 TMEM75Q8N9X5 138 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 C11orf72Q8NBR9 251 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 NKX6-2Q9C056 277 aaPredicted RBP9.47□□□□□ -0.89
VPS28-202ENST00000377348 NAGKQ9UJ70 344 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 BOLA1Q9Y3E2 137 aa9.47□□□□□ -0.89
VPS28-202ENST00000377348 IGHV4-4A0A075B6R2 117 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 RAB5CP51148 216 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 ZNF80P51504 273 aaPredicted RBP9.46□□□□□ -0.9
VPS28-202ENST00000377348 ZNF680Q8NEM1 530 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 NDFIP1Q9BT67 221 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 APLNQ9ULZ1 77 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 KLF12Q9Y4X4 402 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 VPS13DQ5THJ4 4388 aa9.46□□□□□ -0.9
VPS28-202ENST00000377348 GAGE12BA1L429 117 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 GAGE7O76087 117 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 GCGP01275 180 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 GAGE12FP0CL80 117 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 GAGE12GP0CL81 117 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 GAGE12IP0CL82 117 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 Q6ZTI0 123 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 Q86TA4 180 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 LINC00476Q8WZB0 136 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 HIST1H2BAQ96A08 127 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 ARL2-SNX15V9GYD0 113 aa9.45□□□□□ -0.9
VPS28-202ENST00000377348 TRAV21A0A0B4J279 112 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 LY6G6CO95867 125 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 TCL1AP56279 114 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 DAZ2Q13117 558 aaKnown RBP9.44□□□□□ -0.9
VPS28-202ENST00000377348 TMEM183BQ1AE95 376 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 FAM159AQ6UWV7 190 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 ALKAL2Q6UX46 152 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 TMEM183AQ8IXX5 376 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 LINC00612Q8N6U2 182 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 MDFICQ9P1T7 246 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 GNG13Q9P2W3 67 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 C11orf21Q9P2W6 132 aa9.44□□□□□ -0.9
VPS28-202ENST00000377348 KMT2AQ03164 3969 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 TRGV1A0A0A0MS02 117 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 TRAV1-1A0A0B4J248 108 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 SCO2A0A1W2PP80 73 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 FBLL1A6NHQ2 334 aaKnown RBP9.43□□□□□ -0.9
VPS28-202ENST00000377348 GNRH2O43555 120 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 AKR1C3P42330 323 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 PPT1P50897 306 aa9.43□□□□□ -0.9
VPS28-202ENST00000377348 SMUG1Q53HV7 270 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms