RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TRAV12-2A0A075B6T6 113 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 H3BUX3 64 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 FOXE3Q13461 319 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 PDE6HQ13956 83 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 TMEM101Q96IK0 257 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 MINOS1Q5TGZ0 78 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 MINOS1-NBL1R4GNA1 71 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 FAM223BA6NKX1 122 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 A8MWV9 139 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 IGHV3-53P01767 116 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 FAM223AQ8IWN6 122 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 MYMXA0A1B0GTQ4 84 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 EIF4EBP1Q13541 118 aaPredicted RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 RNASE8Q8TDE3 154 aaKnown RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 DLX4Q92988 240 aaPredicted RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 NCOR1P1Q9H4R4 102 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 TLN1Q9Y490 2541 aaKnown RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 SLC25A16P16260 332 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 TSSC4Q9Y5U2 329 aaPredicted RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 LINC00311Q8N616 119 aa5.16□□□□□ -1.58
SMC1A-202ENST00000375340 FAM110DQ8TAY7 271 aaPredicted RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 PHLDA1Q8WV24 401 aaPredicted RBP5.16□□□□□ -1.58
SMC1A-202ENST00000375340 K7EP13 123 aa5.15□□□□□ -1.58
SMC1A-202ENST00000375340 SCGB1A1P11684 91 aa5.15□□□□□ -1.58
SMC1A-202ENST00000375340 MAPK1IP1LQ8NDC0 245 aa5.15□□□□□ -1.58
SMC1A-202ENST00000375340 MRPL35Q9NZE8 188 aaKnown RBP5.15□□□□□ -1.58
SMC1A-202ENST00000375340 RNASE13Q5GAN3 156 aaKnown RBP5.15□□□□□ -1.58
SMC1A-202ENST00000375340 SPXQ9BT56 116 aa5.15□□□□□ -1.58
SMC1A-202ENST00000375340 SRSF8Q9BRL6 282 aaKnown RBP5.15□□□□□ -1.58
SMC1A-202ENST00000375340 RHPN1-AS1Q9BWJ2 59 aa5.15□□□□□ -1.58
SMC1A-202ENST00000375340 TRGV11A0A075B6L2 103 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 ANXA2RQ3ZCQ2 193 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 SPG11Q96JI7 2443 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 NAV3Q8IVL0 2385 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 I3L2K1 104 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 M0R2P5 195 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 OVOL3O00110 214 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 POU2AF1Q16633 256 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 PAPPA-AS1Q5QFB9 102 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 SEM1Q6ZVN7 128 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 DKK4Q9UBT3 224 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 ERG28Q9UKR5 140 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 CENPFP49454 3210 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 TEX29Q8N6K0 151 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 ZNF747Q9BV97 191 aa5.15□□□□□ -1.59
SMC1A-202ENST00000375340 LGALS9BQ3B8N2 356 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 LGALS9CQ6DKI2 356 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 ZNF491Q8N8L2 437 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 STHQ8IWL8 128 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 COPS9Q8WXC6 57 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 TP53TG3Q9ULZ0 132 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 IGHV3-16A0A0C4DH30 117 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 SAP30O75446 220 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 TCF15Q12870 199 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 DAZAP2Q15038 168 aaPredicted RBP5.14□□□□□ -1.59
SMC1A-202ENST00000375340 MSRB1Q9NZV6 116 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 IGLV2-8P01709 118 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 ZNF876PQ49A33 203 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 C9orf139Q6ZV77 190 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 F6UB75 175 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 HLA-DRB4P13762 266 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 RNF114Q9Y508 228 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 HLA-DRB4X5D2U9 266 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 IGHV2-70DA0A0C4DH43 119 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 SPINK8P0C7L1 97 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 CACNA1AO00555 2505 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 FAM208BQ5VWN6 2430 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 KNCNA6PVL3 124 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 GNRH2O43555 120 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 AMTNQ6UX39 209 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 MSRB2Q9Y3D2 182 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 ACACBO00763 2458 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 H3BMG7 143 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 NSUN5P1Q3KNT7 163 aa5.14□□□□□ -1.59
SMC1A-202ENST00000375340 LINC00322Q6ZN03 302 aaPredicted RBP5.14□□□□□ -1.59
SMC1A-202ENST00000375340 RPL39LQ96EH5 51 aaKnown RBP5.14□□□□□ -1.59
SMC1A-202ENST00000375340 ANKRD39Q53RE8 183 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 IGFL3Q6UXB1 125 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TRGV2A0A075B6R0 118 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 DNAL4O96015 105 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 ATXN8Q156A1 80 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 SPINK13Q1W4C9 94 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TEX22C9J3V5 150 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TAX1BP3O14907 124 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 ZFAND6Q6FIF0 208 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 IGKV1D-37A0A075B6S9 117 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 VCYO14598 125 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 C2orf66Q6UXQ4 117 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 PEMTQ9UBM1 199 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 C9JAW5 83 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 SPATA12Q7Z6I5 190 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TTTY13Q9BZ97 58 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 IGHV3-38A0A0C4DH36 116 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TRBV7-9A0A0J9YWB2 115 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TMEM238C9JI98 176 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 K7EIM0 57 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 CDKN1BP46527 198 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 SYNJ2BPP57105 145 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 TIMM21Q9BVV7 248 aa5.13□□□□□ -1.59
SMC1A-202ENST00000375340 PRRC2CQ9Y520 2896 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms