RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 GPHB5Q86YW7 130 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 C15orf53Q8NAA6 179 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 LYPD3O95274 346 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 LINC00479Q96M42 142 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 SPANXA1Q9NS26 97 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 NLRC5Q86WI3 1866 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 CCL24O00175 119 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 C1orf194Q5T5A4 169 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 U3KQE9 123 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 PLXNA4Q9HCM2 1894 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 TRAV4A0A0B4J268 109 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 A8MWP6 167 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 OR11H6Q8NGC7 330 aa8.13□□□□□ -1.11
CLIP1-202ENST00000358808 IGLV10-54A0A075B6I4 117 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 A0A1B0GX51 115 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 YPEL3P61236 119 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-202ENST00000358808 PRSS57Q6UWY2 283 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 PPDPFLQ8WWR9 84 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 TMEM14BQ9NUH8 114 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 KIAA2026Q5HYC2 2103 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 TICRRQ7Z2Z1 1910 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 IGLL5B9A064 214 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 TMEM14EPQ6UXP3 125 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 C5orf24Q7Z6I8 188 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 ANKRD29Q8N6D5 301 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 ACACAQ13085 2346 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 VWA8A3KMH1 1905 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 GP9P14770 177 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 CACNA1BQ00975 2339 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 Q6P435 159 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 MRPL53Q96EL3 112 aaKnown RBP8.12□□□□□ -1.11
CLIP1-202ENST00000358808 TSC2P49815 1807 aa8.12□□□□□ -1.11
CLIP1-202ENST00000358808 IGHV7-4-1A0A0J9YVY3 117 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 DLEU1O43261 78 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 PKDREJQ9NTG1 2253 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-202ENST00000358808 IGKV2-29A2NJV5 120 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-202ENST00000358808 C15orf62A8K5M9 175 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 ELANEP08246 267 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 SPART-AS1P0CW21 52 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 CFPP27918 469 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 BVES-AS1Q5T3Y7 98 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 SPANXDQ9BXN6 97 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 PROP1O75360 226 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 MRPL23Q16540 153 aaKnown RBP8.11□□□□□ -1.11
CLIP1-202ENST00000358808 FAM120AOSQ5T036 256 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 C5orf38Q86SI9 138 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 GYPEP15421 78 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 UBE2V1Q13404 147 aa8.11□□□□□ -1.11
CLIP1-202ENST00000358808 FAM231BA6NCW3 169 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 GAGE12HA6NDE8 117 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 SLC25A29Q8N8R3 303 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 VSIG2Q96IQ7 327 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 TM2D2Q9BX73 214 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 F6UB75 175 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 MRPL51Q4U2R6 128 aaKnown RBP8.1□□□□□ -1.11
CLIP1-202ENST00000358808 PLA2G2CQ5R387 149 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 PRO1854Q9UHT4 67 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 H0Y9J4 135 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 ZNF492Q9P255 531 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 ATP5G1P05496 136 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 MAJINQ3KP22 176 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 FOXI2Q6ZQN5 318 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 COX7B2Q8TF08 81 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 FER1L5A0AVI2 2057 aa8.1□□□□□ -1.11
CLIP1-202ENST00000358808 TRAV1-1A0A0B4J248 108 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 LRCOL1A6NCL2 159 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 LHFPL1Q86WI0 220 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 ESM1Q9NQ30 184 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 TRBV19A0A075B6N1 114 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 CASC2Q6XLA1 102 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 ARFGEF3Q5TH69 2177 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 DEFB136Q30KP8 78 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 RNF138Q8WVD3 245 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 NCR3O14931 201 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 BAALC-AS2P0C853 105 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 APRG1Q8IVJ8 170 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 Q9H8V8 135 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 FNDC10F2Z333 226 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.09□□□□□ -1.11
CLIP1-202ENST00000358808 J3QQQ9 107 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 Q6ZWC4 215 aa8.09□□□□□ -1.11
CLIP1-202ENST00000358808 C5orf63A6NC05 138 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 COL6A6A6NMZ7 2263 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 NYNRINQ9P2P1 1898 aaKnown RBP8.08□□□□□ -1.12
CLIP1-202ENST00000358808 DOCK9Q9BZ29 2069 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 ABCA4P78363 2273 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 COX7A2LO14548 114 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 SEM1Q6ZVN7 128 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 NPBQ8NG41 125 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 SRSF2Q01130 221 aaKnown RBP8.08□□□□□ -1.12
CLIP1-202ENST00000358808 NREPQ16612 68 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 DEFB112Q30KQ8 113 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 RNF144BQ7Z419 303 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 VPREB3Q9UKI3 123 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 SHANK1Q9Y566 2161 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 LRRK1Q38SD2 2015 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 DYNAPQ8N1N2 210 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 ZNF664Q8N3J9 261 aa8.08□□□□□ -1.12
CLIP1-202ENST00000358808 C16orf74Q96GX8 76 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms