RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PRSS57Q6UWY2 283 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 UNQ9165/PRO28630Q6UXU0 137 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 OR8A1Q8NGG7 326 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 GLMPQ8WWB7 406 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 C16orf92Q96LL3 132 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 C11orf21Q9P2W6 132 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 CDKN1BP46527 198 aa16.67■□□□□ 0.26
SHMT1-202ENST00000352886 HIST1H1AQ02539 215 aaPredicted RBP16.67■□□□□ 0.26
SHMT1-202ENST00000352886 SPG11Q96JI7 2443 aa16.66■□□□□ 0.26
SHMT1-202ENST00000352886 HIF1ANQ9NWT6 349 aa16.66■□□□□ 0.26
SHMT1-202ENST00000352886 C9orf47Q6ZRZ4 202 aa16.66■□□□□ 0.26
SHMT1-202ENST00000352886 SCRT2Q9NQ03 307 aa16.66■□□□□ 0.26
SHMT1-202ENST00000352886 PIEZO1Q92508 2521 aa16.65■□□□□ 0.26
SHMT1-202ENST00000352886 SLC25A34Q6PIV7 304 aa16.65■□□□□ 0.26
SHMT1-202ENST00000352886 SMAD7O15105 426 aaKnown RBP16.65■□□□□ 0.26
SHMT1-202ENST00000352886 IGHG2P01859 326 aa16.65■□□□□ 0.26
SHMT1-202ENST00000352886 HBDP02042 147 aa16.65■□□□□ 0.26
SHMT1-202ENST00000352886 MSMBP08118 114 aa16.65■□□□□ 0.26
SHMT1-202ENST00000352886 A6NDX4 124 aa16.64■□□□□ 0.25
SHMT1-202ENST00000352886 K7EP13 123 aa16.64■□□□□ 0.25
SHMT1-202ENST00000352886 MS4A6AQ9H2W1 248 aa16.64■□□□□ 0.25
SHMT1-202ENST00000352886 GAS8-AS1O95177 125 aa16.64■□□□□ 0.25
SHMT1-202ENST00000352886 NDUFA4O00483 81 aa16.63■□□□□ 0.25
SHMT1-202ENST00000352886 IGHV3-11P01762 117 aa16.63■□□□□ 0.25
SHMT1-202ENST00000352886 BLCAPP62952 87 aa16.63■□□□□ 0.25
SHMT1-202ENST00000352886 FOXE3Q13461 319 aa16.63■□□□□ 0.25
SHMT1-202ENST00000352886 C9orf139Q6ZV77 190 aa16.63■□□□□ 0.25
SHMT1-202ENST00000352886 MAP1AP78559 2803 aaPredicted RBP16.63■□□□□ 0.25
SHMT1-202ENST00000352886 PPBPP02775 128 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 Q6ZQT7 251 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 Q6ZVH6 145 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 C20orf173Q96LM9 149 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 KLK15Q9H2R5 256 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 CELSR2Q9HCU4 2923 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 UBE2V1Q13404 147 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 Q6ZS46 218 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 ZNF738Q8NE65 137 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 MAP1LC3AQ9H492 121 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 CACNA1AO00555 2505 aa16.62■□□□□ 0.25
SHMT1-202ENST00000352886 USMG5Q96IX5 58 aa16.61■□□□□ 0.25
SHMT1-202ENST00000352886 PF4V1P10720 104 aa16.61■□□□□ 0.25
SHMT1-202ENST00000352886 GPHB5Q86YW7 130 aa16.61■□□□□ 0.25
SHMT1-202ENST00000352886 H3BUA1 57 aa16.6■□□□□ 0.25
SHMT1-202ENST00000352886 DOPEY1Q5JWR5 2465 aa16.6■□□□□ 0.25
SHMT1-202ENST00000352886 FLNCQ14315 2725 aa16.6■□□□□ 0.25
SHMT1-202ENST00000352886 IGHV7-4-1A0A0J9YVY3 117 aa16.6■□□□□ 0.25
SHMT1-202ENST00000352886 MPV17L2Q567V2 206 aa16.6■□□□□ 0.25
SHMT1-202ENST00000352886 TNFRSF6BO95407 300 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 EVI2AP22794 236 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 LCNL1Q6ZST4 164 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 BRI3O95415 125 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 CACNG7P62955 275 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 PRR9Q5T870 116 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 COX11Q9Y6N1 276 aa16.59■□□□□ 0.25
SHMT1-202ENST00000352886 CRYBG3Q68DQ2 2970 aa16.58■□□□□ 0.25
SHMT1-202ENST00000352886 AVPP01185 164 aa16.58■□□□□ 0.25
SHMT1-202ENST00000352886 GATA1P15976 413 aaPredicted RBP16.58■□□□□ 0.25
SHMT1-202ENST00000352886 OR4X2Q8NGF9 303 aa16.58■□□□□ 0.25
SHMT1-202ENST00000352886 IFI27L1Q96BM0 104 aa16.58■□□□□ 0.25
SHMT1-202ENST00000352886 IGSF10Q6WRI0 2623 aa16.58■□□□□ 0.24
SHMT1-202ENST00000352886 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.58■□□□□ 0.241e-8■■■■□ 21.6
SHMT1-202ENST00000352886 LGALS9BQ3B8N2 356 aa16.58■□□□□ 0.24
SHMT1-202ENST00000352886 LGALS9CQ6DKI2 356 aa16.58■□□□□ 0.24
SHMT1-202ENST00000352886 USP9XQ93008 2570 aaPredicted RBP16.57■□□□□ 0.24
SHMT1-202ENST00000352886 NPFFR1Q9GZQ6 430 aa16.57■□□□□ 0.24
SHMT1-202ENST00000352886 J3KRW8 73 aa16.57■□□□□ 0.24
SHMT1-202ENST00000352886 RNF151Q2KHN1 245 aa16.57■□□□□ 0.24
SHMT1-202ENST00000352886 NRGNQ92686 78 aa16.57■□□□□ 0.24
SHMT1-202ENST00000352886 B4DSR2 109 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 SOCS3O14543 225 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 NUDT3O95989 172 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 RPL11P62913 178 aaKnown RBP16.56■□□□□ 0.24
SHMT1-202ENST00000352886 LENEPQ9Y5L5 61 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 COX8AP10176 69 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 WFDC3Q8IUB2 231 aa16.56■□□□□ 0.24
SHMT1-202ENST00000352886 NXT2Q9NPJ8 142 aaKnown RBP16.56■□□□□ 0.24
SHMT1-202ENST00000352886 DEFB1P60022 68 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 LINC01546A6NGU7 62 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 SPANXN1Q5VSR9 72 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 SMIM15Q7Z3B0 74 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 OR10J6PQ8NGY7 276 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 UFC1Q9Y3C8 167 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 CSMD2Q7Z408 3487 aa16.55■□□□□ 0.24
SHMT1-202ENST00000352886 IGLV1-40P01703 118 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 LINC00477Q96M19 166 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 C18orf15Q96N68 181 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 IGKV3-7A0A075B6H7 116 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 H3BVH4 76 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 LEPP41159 167 aa16.54■□□□□ 0.24
SHMT1-202ENST00000352886 A0A0G2JLM5 398 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 SNAI2O43623 268 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 BVES-AS1Q5T3Y7 98 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 ZFAND2AQ8N6M9 145 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 CSPG4Q6UVK1 2322 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 OVOL1O14753 267 aa16.53■□□□□ 0.24
SHMT1-202ENST00000352886 UTP20O75691 2785 aaKnown RBP16.52■□□□□ 0.24
SHMT1-202ENST00000352886 TRAV26-2A0A0B4J265 109 aa16.52■□□□□ 0.24
SHMT1-202ENST00000352886 TM4SF20Q53R12 229 aa16.52■□□□□ 0.24
SHMT1-202ENST00000352886 OR2K2Q8NGT1 345 aa16.52■□□□□ 0.24
SHMT1-202ENST00000352886 SELENOKQ9Y6D0 94 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms