RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CADP27708 2225 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 FAM104BQ5XKR9 115 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 NDUFA4L2Q9NRX3 87 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 TRBV6-6A0A0A6YYG2 114 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 PDE6HQ13956 83 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 GFRA4Q9GZZ7 299 aa10.05□□□□□ -0.8
SDC3-201ENST00000336798 H3BMG7 143 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 LY96Q9Y6Y9 160 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 GNRH2O43555 120 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 Q6ZR03 302 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 IGLV10-54A0A075B6I4 117 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 NDUFS7O75251 213 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 C17orf58Q2M2W7 97 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 TIMM17AQ99595 171 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 PHF3Q92576 2039 aaKnown RBP10.04□□□□□ -0.8
SDC3-201ENST00000336798 C17orf82Q86X59 251 aaPredicted RBP10.04□□□□□ -0.8
SDC3-201ENST00000336798 RALGAPA2Q2PPJ7 1873 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 INAFM2P0DMQ5 153 aa10.04□□□□□ -0.8
SDC3-201ENST00000336798 LCTP09848 1927 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGHV3-30P01768 117 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGHV3-33P01772 117 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGHV3-30-3P0DP02 117 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGHV3-30-5P0DP03 117 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 FNDC10F2Z333 226 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGHV4-59P01825 116 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 TMEM14BQ9NUH8 114 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 ZNF833PQ6ZTB9 187 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 NDUFA4O00483 81 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 IGLC7A0M8Q6 106 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 C18orf32Q8TCD1 76 aa10.03□□□□□ -0.8
SDC3-201ENST00000336798 DOCK7Q96N67 2140 aa10.02□□□□□ -0.8
SDC3-201ENST00000336798 ZNF503-AS2A6NEH8 195 aa10.02□□□□□ -0.8
SDC3-201ENST00000336798 WDR86Q86TI4 376 aa10.02□□□□□ -0.8
SDC3-201ENST00000336798 C17orf77Q96MU5 243 aa10.02□□□□□ -0.8
SDC3-201ENST00000336798 LOXP28300 417 aaPredicted RBP10.02□□□□□ -0.81
SDC3-201ENST00000336798 YPEL3P61236 119 aaPredicted RBP10.02□□□□□ -0.81
SDC3-201ENST00000336798 DEFB112Q30KQ8 113 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 C15orf53Q8NAA6 179 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 CARD19Q96LW7 228 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 U3KQE9 123 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 WDR90Q96KV7 1748 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 ZC2HC1AQ96GY0 325 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 COL6A6A6NMZ7 2263 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 IGLL1P15814 213 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 C10orf91Q5T1B1 145 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 CFHR4Q92496 578 aa10.02□□□□□ -0.81
SDC3-201ENST00000336798 IGHV1-24A0A0C4DH33 117 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 ZNF134P52741 427 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 PRR25Q96S07 402 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 EP300Q09472 2414 aaPredicted RBP10.01□□□□□ -0.81
SDC3-201ENST00000336798 ABCA4P78363 2273 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 WISP1O95388 367 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 GRNP28799 593 aaKnown RBP10.01□□□□□ -0.81
SDC3-201ENST00000336798 CRIPAKQ8N1N5 446 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 MRPL35Q9NZE8 188 aaKnown RBP10.01□□□□□ -0.81
SDC3-201ENST00000336798 IGLV3-9A0A075B6K5 115 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 IGHV7-4-1A0A0J9YVY3 117 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 TEX48A0A1B0GUV7 120 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 NPYP01303 97 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 NBL1P41271 181 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 RBM3P98179 157 aaKnown RBP10.01□□□□□ -0.81
SDC3-201ENST00000336798 H3BRN7 92 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 BUB3O43684 328 aa10.01□□□□□ -0.81
SDC3-201ENST00000336798 SLURP1P55000 103 aa10□□□□□ -0.81
SDC3-201ENST00000336798 C5orf38Q86SI9 138 aa10□□□□□ -0.81
SDC3-201ENST00000336798 TMEM258P61165 79 aa10□□□□□ -0.81
SDC3-201ENST00000336798 SIGLEC8Q9NYZ4 499 aa10□□□□□ -0.81
SDC3-201ENST00000336798 CCL24O00175 119 aa10□□□□□ -0.81
SDC3-201ENST00000336798 Q0VG73 95 aa10□□□□□ -0.81
SDC3-201ENST00000336798 WT1-ASQ06250 92 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 FOXE3Q13461 319 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 ANKRD39Q53RE8 183 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 UTF1Q5T230 341 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 CEND1Q8N111 149 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 SPANXCQ9NY87 97 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 ZNF492Q9P255 531 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 AMTNQ6UX39 209 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 NRGNQ92686 78 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 A0A0G2JMZ2 1700 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 LRRC37A2A6NM11 1700 aa9.99□□□□□ -0.81
SDC3-201ENST00000336798 TCF20Q9UGU0 1960 aaKnown RBP9.99□□□□□ -0.81
SDC3-201ENST00000336798 HOXB4P17483 251 aaPredicted RBP9.98□□□□□ -0.81
SDC3-201ENST00000336798 SH2D6Q7Z4S9 175 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 BRK1Q8WUW1 75 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 GBF1Q92538 1859 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 SHISA9B4DS77 424 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 G3V4G9 280 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 PIFOQ8TCI5 191 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 MRPL53Q96EL3 112 aaKnown RBP9.98□□□□□ -0.81
SDC3-201ENST00000336798 HERVK_113P63121 156 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 CT83Q5H943 113 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 TMEM190Q8WZ59 177 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 DKK2Q9UBU2 259 aa9.98□□□□□ -0.81
SDC3-201ENST00000336798 CHKB-CPT1BH3BT56 60 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 DEFB4AO15263 64 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 KIR2DL5BA0A0G2JN68 375 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 KIR2DL5BA0A0G2JPC4 375 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 KIR2DL5AQ8N109 375 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 CLUHP3Q96NS8 147 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 COX8AP10176 69 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms