RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TMPRSS5Q9H3S3 457 aa9.98□□□□□ -0.81
LIMS1-201ENST00000332345 EPDR1Q9UM22 224 aa9.98□□□□□ -0.81
LIMS1-201ENST00000332345 MAP1LC3B2A6NCE7 125 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 CBY3A6NI87 242 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 RGS13O14921 159 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 TCRAP04437 139 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 DEFB130BP0DP73 79 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 DEFB130AP0DP74 79 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 FGF8P55075 233 aaPredicted RBP9.97□□□□□ -0.81
LIMS1-201ENST00000332345 GNG5P63218 68 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 EIF5AL1Q6IS14 154 aaKnown RBP9.97□□□□□ -0.81
LIMS1-201ENST00000332345 DPPA3Q6W0C5 159 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 EIF4E3Q8N5X7 224 aaKnown RBP9.97□□□□□ -0.81
LIMS1-201ENST00000332345 ZNF680Q8NEM1 530 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 MAP1LC3BQ9GZQ8 125 aa9.97□□□□□ -0.81
LIMS1-201ENST00000332345 NOP10Q9NPE3 64 aaKnown RBP9.97□□□□□ -0.81
LIMS1-201ENST00000332345 FBLL1A6NHQ2 334 aaKnown RBP9.96□□□□□ -0.82
LIMS1-201ENST00000332345 GGTLC3B5MD39 225 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 LY6G6CO95867 125 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 IFNA7P01567 189 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 ANXA2RQ3ZCQ2 193 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 FAM213BQ8TBF2 198 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 SFT2D1Q8WV19 159 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 MBD3L1Q8WWY6 194 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 FAM210BQ96KR6 192 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 NDFIP1Q9BT67 221 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 TREM1Q9NP99 234 aa9.96□□□□□ -0.82
LIMS1-201ENST00000332345 IGHV4-4A0A075B6R2 117 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 IGHV1OR15-1A0A075B7D0 117 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 TRAV8-1A0A0A6YYK1 113 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 HTN3P15516 51 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 FHITP49789 147 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 UBE2G2P60604 165 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 PRR9Q5T870 116 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 LINC00476Q8WZB0 136 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 ATG101Q9BSB4 218 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 NDUFAF3Q9BU61 184 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 APLNQ9ULZ1 77 aa9.95□□□□□ -0.82
LIMS1-201ENST00000332345 FAM74A7A6NL05 159 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 H2AFB1P0C5Y9 115 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 RAB5CP51148 216 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 DAZ2Q13117 558 aaKnown RBP9.94□□□□□ -0.82
LIMS1-201ENST00000332345 Q6AWC8 147 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 LGALS9CQ6DKI2 356 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 CYB561D1Q8N8Q1 229 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 PSG8Q9UQ74 426 aa9.94□□□□□ -0.82
LIMS1-201ENST00000332345 TRAV21A0A0B4J279 112 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 F6UZH7 168 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 ATP5G1P05496 136 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 ATP5G3P48201 142 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 PPT1P50897 306 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 FLI1Q01543 452 aaPredicted RBP9.93□□□□□ -0.82
LIMS1-201ENST00000332345 SAPCD1Q5SSQ6 148 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 IBA57Q5T440 356 aaKnown RBP9.93□□□□□ -0.82
LIMS1-201ENST00000332345 FAM159AQ6UWV7 190 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 SLC51BQ86UW2 128 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 TMEM75Q8N9X5 138 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 HIST1H2BAQ96A08 127 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 SGK494Q96LW2 274 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 GSN-AS1Q9NRJ2 163 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 SACSQ9NZJ4 4579 aa9.93□□□□□ -0.82
LIMS1-201ENST00000332345 ZFP69Q49AA0 526 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 CST9LP1Q5W188 147 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 Q6ZQT7 251 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 PRNTQ86SH4 94 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 TVP23CQ96ET8 276 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 TCEAL7Q9BRU2 100 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 ARL2-SNX15V9GYD0 113 aa9.92□□□□□ -0.82
LIMS1-201ENST00000332345 F5H768 121 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 TEX46H3BTG2 121 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 PEX7O00628 323 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 MUC21Q5SSG8 566 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 C11orf72Q8NBR9 251 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 PGPEP1Q9NXJ5 209 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 TP53TG3Q9ULZ0 132 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 RYR3Q15413 4870 aa9.91□□□□□ -0.82
LIMS1-201ENST00000332345 GAGE12BA1L429 117 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 PAGE4O60829 102 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 GAGE7O76087 117 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 IGLV2-11P01706 119 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 GAGE12FP0CL80 117 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 GAGE12GP0CL81 117 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 GAGE12IP0CL82 117 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 TCL1AP56279 114 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 ZNF415Q09FC8 603 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 SMUG1Q53HV7 270 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 LINC00612Q8N6U2 182 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 KCNS1Q96KK3 526 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 LINC00479Q96M42 142 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 KLF12Q9Y4X4 402 aa9.9□□□□□ -0.82
LIMS1-201ENST00000332345 TRGV11A0A075B6L2 103 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TRGV2A0A075B6R0 118 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TRGV1A0A0A0MS02 117 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TRAV34A0A0B4J273 112 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 A0A1B0GV50 99 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 A0A1B0GVG6 124 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 SULT1A2P50226 295 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 LGALS9BQ3B8N2 356 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TDRG1Q3Y452 100 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TMEM88Q6PEY1 159 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms