RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HIGD1BQ9P298 99 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 TRBV19A0A075B6N1 114 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 C12orf74Q32Q52 190 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 RNF114Q9Y508 228 aa11.54□□□□□ -0.56
COL7A1-201ENST00000328333 TMEM178BH3BS89 294 aa11.54□□□□□ -0.56
COL7A1-201ENST00000328333 E9PLN8 166 aa11.54□□□□□ -0.56
COL7A1-201ENST00000328333 C3orf36Q3SXR2 165 aa11.54□□□□□ -0.56
COL7A1-201ENST00000328333 PIEZO2Q9H5I5 2752 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 LINC00473A8K010 186 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 PNRC2Q9NPJ4 139 aaKnown RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 A0A087WWL8 130 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 PATE3B3GLJ2 98 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 ATP5EP56381 51 aaPredicted RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 FN1P02751 2386 aaKnown RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 IGHV3-73A0A0B4J1V6 119 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 LYPD6BQ8NI32 183 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 KLF2Q9Y5W3 355 aaPredicted RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 SMKR1H3BMG3 65 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 MST1LQ2TV78 715 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 ZNF837Q96EG3 531 aaPredicted RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 MRPL35Q9NZE8 188 aaKnown RBP11.53□□□□□ -0.56
COL7A1-201ENST00000328333 IGHV1-46P01743 117 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 SCRT2Q9NQ03 307 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 NDUFA4L2Q9NRX3 87 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 CTSBP07858 339 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 LCNL1Q6ZST4 164 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 LINC01560Q8TB33 94 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 CFC1BP0CG36 223 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 CFC1P0CG37 223 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 ZNF134P52741 427 aa11.53□□□□□ -0.56
COL7A1-201ENST00000328333 E9PQ18 207 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 PRDM6Q9NQX0 595 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 IGKV1-12A0A0C4DH73 117 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 IGKV1D-12P01611 117 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 GATA4P43694 442 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 CPAMD8Q8IZJ3 1885 aa11.52□□□□□ -0.56
COL7A1-201ENST00000328333 SS18L2Q9UHA2 77 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 ADAMTS20P59510 1910 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 ACANP16112 2415 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 A0A1W2PPI3 338 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 SAP30O75446 220 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 Q6P435 159 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 Q71RC1 249 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-201ENST00000328333 FAM27E3Q08E93 113 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 PIEZO1Q92508 2521 aa11.52□□□□□ -0.57
COL7A1-201ENST00000328333 A0A0B4J2C4 111 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 PRSS57Q6UWY2 283 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 IGHV1-18A0A0C4DH31 117 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 FAM236AA0A1B0GUQ0 79 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 FAM236BA0A1B0GV22 79 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 K7ERJ3 54 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 IGHV3OR16-10A0A075B7F0 116 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 LTAP01374 205 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 IGHV1-69DA0A0B4J2H0 117 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 CELA3AP09093 270 aa11.51□□□□□ -0.57
COL7A1-201ENST00000328333 SLC25A29Q8N8R3 303 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 FXYD7P58549 80 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 PRR25Q96S07 402 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 SELENOKQ9Y6D0 94 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 PKD1L2Q7Z442 2459 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 JMJD7-PLA2G4BH0Y9G9 81 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 FAM201AQ5SY85 155 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 A0A1B0GX51 115 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 GGNQ86UU5 652 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 LTBP1Q14766 1721 aa11.5□□□□□ -0.57
COL7A1-201ENST00000328333 C9orf106Q8NAJ2 232 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 RHPN1-AS1Q9BWJ2 59 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 METRNQ9UJH8 293 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 IGLC7A0M8Q6 106 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 BAALC-AS2P0C853 105 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 TGFBR3LH3BV60 316 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 B4DSR2 109 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 TAX1BP3O14907 124 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 CHKB-CPT1BH3BT56 60 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 CCL25O15444 150 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 EFNA4P52798 201 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 PSPNO60542 156 aa11.49□□□□□ -0.57
COL7A1-201ENST00000328333 ATP5EP2Q5VTU8 51 aa11.48□□□□□ -0.57
COL7A1-201ENST00000328333 H3BT86 120 aa11.48□□□□□ -0.57
COL7A1-201ENST00000328333 PAX9P55771 341 aa11.48□□□□□ -0.57
COL7A1-201ENST00000328333 NDUFS7O75251 213 aa11.48□□□□□ -0.57
COL7A1-201ENST00000328333 MRPL53Q96EL3 112 aaKnown RBP11.48□□□□□ -0.57
COL7A1-201ENST00000328333 TRAV25A0A0B4J276 109 aa11.48□□□□□ -0.57
COL7A1-201ENST00000328333 A0A1W2PRX2 142 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 SPACA3Q8IXA5 215 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 FGFBP3Q8TAT2 258 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 TEX48A0A1B0GUV7 120 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 VSIG2Q96IQ7 327 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 CYYR1Q96J86 154 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 ICOSQ9Y6W8 199 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 IGHV1OR15-1A0A075B7D0 117 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 TFF2Q03403 129 aa11.47□□□□□ -0.57
COL7A1-201ENST00000328333 MRPL55Q7Z7F7 128 aaKnown RBP11.47□□□□□ -0.57
COL7A1-201ENST00000328333 TRAV3A0A0B4J244 114 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 CR1LQ2VPA4 569 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 CD177Q8N6Q3 437 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 SH2D6Q7Z4S9 175 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 ABCA12Q86UK0 2595 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 IGKV1-16P04430 117 aa11.46□□□□□ -0.57
COL7A1-201ENST00000328333 LMO1P25800 156 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms