RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 DEFB104AQ8WTQ1 72 aa15.28■□□□□ 0.04
USP48-201ENST00000308271 RNASE1P07998 156 aaKnown RBP15.27■□□□□ 0.04
USP48-201ENST00000308271 SRD5A1P18405 259 aa15.27■□□□□ 0.04
USP48-201ENST00000308271 CR1LQ2VPA4 569 aa15.27■□□□□ 0.04
USP48-201ENST00000308271 NEGR1Q7Z3B1 354 aa15.27■□□□□ 0.04
USP48-201ENST00000308271 TRAV26-2A0A0B4J265 109 aa15.27■□□□□ 0.04
USP48-201ENST00000308271 A0A1B0GXF2 115 aa15.27■□□□□ 0.04
USP48-201ENST00000308271 WFDC12Q8WWY7 111 aa15.27■□□□□ 0.03
USP48-201ENST00000308271 TOMM7Q9P0U1 55 aa15.27■□□□□ 0.03
USP48-201ENST00000308271 MED13LQ71F56 2210 aa15.27■□□□□ 0.03
USP48-201ENST00000308271 HIGD1BQ9P298 99 aa15.27■□□□□ 0.03
USP48-201ENST00000308271 FAM223BA6NKX1 122 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 FAM223AQ8IWN6 122 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 C20orf78Q9BR46 151 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 IGLL5B9A064 214 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 SPATA12Q7Z6I5 190 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 TIMM21Q9BVV7 248 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 PRO1854Q9UHT4 67 aa15.26■□□□□ 0.03
USP48-201ENST00000308271 PROP1O75360 226 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 RBMY1BA6NDE4 496 aaKnown RBP15.25■□□□□ 0.03
USP48-201ENST00000308271 RBMY1EA6NEQ0 496 aaKnown RBP15.25■□□□□ 0.03
USP48-201ENST00000308271 RBMY1DP0C7P1 496 aaKnown RBP15.25■□□□□ 0.03
USP48-201ENST00000308271 RBMY1A1P0DJD3 496 aaKnown RBP15.25■□□□□ 0.03
USP48-201ENST00000308271 RBMY1CP0DJD4 496 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 USMG5Q96IX5 58 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 PCDH15Q96QU1 1955 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 A0A087WWL8 130 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 C19orf71A6NCJ1 209 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 FOXI2Q6ZQN5 318 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 TMEM219Q86XT9 240 aa15.25■□□□□ 0.03
USP48-201ENST00000308271 IGKV1-17P01599 117 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 C8orf86Q6ZUL3 223 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 C2orf16Q68DN1 1984 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 LY6G5BQ8NDX9 201 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 PLCE1Q9P212 2302 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 LTBP2Q14767 1821 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 TNCP24821 2201 aa15.24■□□□□ 0.03
USP48-201ENST00000308271 FCN3O75636 299 aa15.23■□□□□ 0.03
USP48-201ENST00000308271 ITLN2Q8WWU7 325 aaPredicted RBP15.23■□□□□ 0.03
USP48-201ENST00000308271 A0A0U1RRA0 63 aa15.23■□□□□ 0.03
USP48-201ENST00000308271 SPRNQ5BIV9 151 aa15.23■□□□□ 0.03
USP48-201ENST00000308271 K7EMI3 77 aa15.23■□□□□ 0.03
USP48-201ENST00000308271 EIF4EBP1Q13541 118 aaPredicted RBP15.23■□□□□ 0.03
USP48-201ENST00000308271 RHPN1-AS1Q9BWJ2 59 aa15.23■□□□□ 0.03
USP48-201ENST00000308271 G3V4G9 280 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 ZNF688P0C7X2 276 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 CCL19Q99731 98 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 MBD6Q96DN6 1003 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 FXYD2P54710 66 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 NPC2P61916 151 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 SPXQ9BT56 116 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 H3BMM0 161 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 ATP6V0E1O15342 81 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 SH2D6Q7Z4S9 175 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 TRPT1Q86TN4 253 aaKnown RBP15.22■□□□□ 0.03
USP48-201ENST00000308271 UBE2WQ96B02 151 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 PRSS22Q9GZN4 317 aa15.22■□□□□ 0.03
USP48-201ENST00000308271 TNRC6AQ8NDV7 1962 aaKnown RBP15.22■□□□□ 0.03
USP48-201ENST00000308271 MED12LQ86YW9 2145 aa15.21■□□□□ 0.03
USP48-201ENST00000308271 I3L2K1 104 aa15.21■□□□□ 0.03
USP48-201ENST00000308271 FAM215AQ9Y5M1 114 aa15.21■□□□□ 0.03
USP48-201ENST00000308271 TRBV6-1A0A0K0K1D8 114 aa15.21■□□□□ 0.03
USP48-201ENST00000308271 GDF5OSQ5U4N7 250 aa15.21■□□□□ 0.03
USP48-201ENST00000308271 SDHAF1A6NFY7 115 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 HLA-DMBP28068 263 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 RBX1P62877 108 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 IGFL3Q6UXB1 125 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 C1orf122Q6ZSJ8 110 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 LY6HO94772 140 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 FGF6P10767 208 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 CTSZQ9UBR2 303 aa15.2■□□□□ 0.02
USP48-201ENST00000308271 TRAV8-3A0A0A6YYJ7 113 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 SLC25A20O43772 301 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 DYNAPQ8N1N2 210 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 NOTCH3Q9UM47 2321 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 MRPL36Q9P0J6 103 aaKnown RBP15.19■□□□□ 0.02
USP48-201ENST00000308271 RBAKDNA6NC62 111 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 K7EIM0 57 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 SAA4P35542 130 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 ZNF48Q96MX3 618 aaPredicted RBP15.19■□□□□ 0.02
USP48-201ENST00000308271 PEMTQ9UBM1 199 aa15.19■□□□□ 0.02
USP48-201ENST00000308271 PRSS29PA6NIE9 313 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 C1QTNF4Q9BXJ3 329 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 DAZ1Q9NQZ3 744 aaKnown RBP15.18■□□□□ 0.02
USP48-201ENST00000308271 GATA1P15976 413 aaPredicted RBP15.18■□□□□ 0.02
USP48-201ENST00000308271 ANXA2RQ3ZCQ2 193 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 AGPAT4-IT1Q9H0P7 198 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 TCF15Q12870 199 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 RASL10AQ92737 203 aa15.18■□□□□ 0.02
USP48-201ENST00000308271 ZNF493Q6ZR52 646 aa15.17■□□□□ 0.02
USP48-201ENST00000308271 J3QQQ9 107 aa15.17■□□□□ 0.02
USP48-201ENST00000308271 WFDC2Q14508 124 aa15.17■□□□□ 0.02
USP48-201ENST00000308271 CRYGCP07315 174 aa15.17■□□□□ 0.02
USP48-201ENST00000308271 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.17■□□□□ 0.028e-7■■■■□ 25
USP48-201ENST00000308271 E7EUB6 86 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 UBE2E1P51965 193 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 MSRB1Q9NZV6 116 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 CFHR4Q92496 578 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 MLST8Q9BVC4 326 aa15.16■□□□□ 0.02
USP48-201ENST00000308271 LENEPQ9Y5L5 61 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms