RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IGF1P05019 195 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 Q6ZVH6 145 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 HIF1ANQ9NWT6 349 aa15.36■□□□□ 0.05
VPS53-201ENST00000291074 FXYD7P58549 80 aa15.35■□□□□ 0.05
VPS53-201ENST00000291074 USP24Q9UPU5 2620 aa15.35■□□□□ 0.05
VPS53-201ENST00000291074 GLMPQ8WWB7 406 aa15.35■□□□□ 0.05
VPS53-201ENST00000291074 ANKRD17O75179 2603 aaKnown RBP15.34■□□□□ 0.05
VPS53-201ENST00000291074 FAM208BQ5VWN6 2430 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 A0A096LNJ9 63 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 IGHG2P01859 326 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 TSPOP30536 169 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 HSPB8Q9UJY1 196 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 USP9YO00507 2555 aaPredicted RBP15.34■□□□□ 0.05
VPS53-201ENST00000291074 IGKV3D-20A0A0C4DH25 116 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 NPYP01303 97 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 LINC01559Q495D7 138 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 TMEM78Q5T7P6 136 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 C16orf92Q96LL3 132 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 C20orf173Q96LM9 149 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 SELENOKQ9Y6D0 94 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 ZANQ9Y493 2812 aa15.34■□□□□ 0.05
VPS53-201ENST00000291074 C20orf202A1L168 122 aa15.33■□□□□ 0.05
VPS53-201ENST00000291074 PF4V1P10720 104 aa15.33■□□□□ 0.05
VPS53-201ENST00000291074 GAS8-AS1O95177 125 aa15.33■□□□□ 0.04
VPS53-201ENST00000291074 CKS2P33552 79 aa15.33■□□□□ 0.04
VPS53-201ENST00000291074 SRSF2Q01130 221 aaKnown RBP15.33■□□□□ 0.04
VPS53-201ENST00000291074 ZNF747Q9BV97 191 aa15.33■□□□□ 0.04
VPS53-201ENST00000291074 PRB1P04280 392 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 FOXE3Q13461 319 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 OR10AG1Q8NH19 301 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 LAMTOR2Q9Y2Q5 125 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 FBN2P35556 2912 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 ZNF462Q96JM2 2506 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 DEFB1P60022 68 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 TMEM191AQ9H0A3 160 aa15.32■□□□□ 0.04
VPS53-201ENST00000291074 RBX1P62877 108 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 PET117Q6UWS5 81 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 GPHB5Q86YW7 130 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 STPG4Q8N801 248 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 RNF185Q96GF1 192 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 PRSS57Q6UWY2 283 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 ATP6V0BQ99437 205 aa15.31■□□□□ 0.04
VPS53-201ENST00000291074 TMEM95Q3KNT9 176 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 MRPL53Q96EL3 112 aaKnown RBP15.3■□□□□ 0.04
VPS53-201ENST00000291074 CNFNQ9BYD5 112 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 LRRK2Q5S007 2527 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 CCL25O15444 150 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 PRR9Q5T870 116 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 C9orf47Q6ZRZ4 202 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 J3KRW8 73 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 NDUFA4O00483 81 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 COL5A1-AS1Q5SY13 56 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 ZNF738Q8NE65 137 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 OR8A1Q8NGG7 326 aa15.3■□□□□ 0.04
VPS53-201ENST00000291074 B4DSR2 109 aa15.29■□□□□ 0.04
VPS53-201ENST00000291074 HINT1P49773 126 aaPredicted RBP15.29■□□□□ 0.04
VPS53-201ENST00000291074 OR4X2Q8NGF9 303 aa15.29■□□□□ 0.04
VPS53-201ENST00000291074 HIST1H1AQ02539 215 aaPredicted RBP15.29■□□□□ 0.04
VPS53-201ENST00000291074 IGKV3-7A0A075B6H7 116 aa15.28■□□□□ 0.04
VPS53-201ENST00000291074 LINC01545Q5VT33 79 aa15.28■□□□□ 0.04
VPS53-201ENST00000291074 C9orf139Q6ZV77 190 aa15.28■□□□□ 0.04
VPS53-201ENST00000291074 MAPK1IP1LQ8NDC0 245 aa15.28■□□□□ 0.04
VPS53-201ENST00000291074 GATA1P15976 413 aaPredicted RBP15.27■□□□□ 0.04
VPS53-201ENST00000291074 USMG5Q96IX5 58 aa15.27■□□□□ 0.04
VPS53-201ENST00000291074 ST20Q9HBF5 79 aa15.27■□□□□ 0.04
VPS53-201ENST00000291074 EVI2AP22794 236 aa15.27■□□□□ 0.03
VPS53-201ENST00000291074 SPOCK3Q9BQ16 436 aa15.27■□□□□ 0.03
VPS53-201ENST00000291074 MRPS16Q9Y3D3 137 aaKnown RBP15.27■□□□□ 0.03
VPS53-201ENST00000291074 RPL11P62913 178 aaKnown RBP15.26■□□□□ 0.03
VPS53-201ENST00000291074 IGHV7-4-1A0A0J9YVY3 117 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 H3BUA1 57 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 EDN2P20800 178 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 PTTG1IPP53801 180 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 COTL1Q14019 142 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 NPFFR1Q9GZQ6 430 aa15.26■□□□□ 0.03
VPS53-201ENST00000291074 TM4SF20Q53R12 229 aa15.25■□□□□ 0.03
VPS53-201ENST00000291074 SOCS3O14543 225 aa15.25■□□□□ 0.03
VPS53-201ENST00000291074 IGLV1-40P01703 118 aa15.25■□□□□ 0.03
VPS53-201ENST00000291074 IGHV4-59P01825 116 aa15.25■□□□□ 0.03
VPS53-201ENST00000291074 HSBP1L1C9JCN9 74 aa15.24■□□□□ 0.03
VPS53-201ENST00000291074 F6UB75 175 aa15.24■□□□□ 0.03
VPS53-201ENST00000291074 WFDC3Q8IUB2 231 aa15.24■□□□□ 0.03
VPS53-201ENST00000291074 DOPEY2Q9Y3R5 2298 aa15.24■□□□□ 0.03
VPS53-201ENST00000291074 BRI3O95415 125 aa15.23■□□□□ 0.03
VPS53-201ENST00000291074 HBDP02042 147 aa15.23■□□□□ 0.03
VPS53-201ENST00000291074 DEFB112Q30KQ8 113 aa15.23■□□□□ 0.03
VPS53-201ENST00000291074 TNFRSF6BO95407 300 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 SRD5A1P18405 259 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 CFHR3Q02985 330 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 C10orf99Q6UWK7 81 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 BBC3Q96PG8 261 aaPredicted RBP15.22■□□□□ 0.03
VPS53-201ENST00000291074 MAP1LC3AQ9H492 121 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 SCRT2Q9NQ03 307 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 A1L4Q6 167 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 H3BVH4 76 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 SPRY2O43597 315 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 RNF151Q2KHN1 245 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 RHPN1-AS1Q9BWJ2 59 aa15.22■□□□□ 0.03
VPS53-201ENST00000291074 UFC1Q9Y3C8 167 aa15.21■□□□□ 0.03
VPS53-201ENST00000291074 PTPN13Q12923 2485 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms