RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 HLA-DRB4P13762 266 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 HLA-DRB4X5D2U9 266 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 RLFQ13129 1914 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 SPRNQ5BIV9 151 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 TCF15Q12870 199 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 DEFB136Q30KP8 78 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 NACAE9PAV3 2078 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 WIPF3A6NGB9 483 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 E9PQ18 207 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 CD5LO43866 347 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 NPYP01303 97 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 MORN5Q5VZ52 161 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 EDA2RQ9HAV5 297 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 MYLKQ15746 1914 aa9.09□□□□□ -0.95
USP53-201ENST00000274030 WDR81Q562E7 1941 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 FAM231BA6NCW3 169 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 KLF12Q9Y4X4 402 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 IGHV1-24A0A0C4DH33 117 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 A8MWP6 167 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 IGHV4-59P01825 116 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 LINC00311Q8N616 119 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 CTSZQ9UBR2 303 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 FXYD5Q96DB9 178 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 SIGLEC8Q9NYZ4 499 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 CSPG4Q6UVK1 2322 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 J3QKU1 62 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 IGF2BP2-AS1Q96M15 143 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 NOTCH4Q99466 2003 aa9.08□□□□□ -0.96
USP53-201ENST00000274030 Q6ZWC4 215 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 TMEM243Q9BU79 118 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 MRPL35Q9NZE8 188 aaKnown RBP9.07□□□□□ -0.96
USP53-201ENST00000274030 SIP14410 1827 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 VWC2Q2TAL6 325 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 MRAPQ8TCY5 172 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 DEFB112Q30KQ8 113 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 SNHG12Q9BXW3 62 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 GNRH2O43555 120 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 CT83Q5H943 113 aa9.07□□□□□ -0.96
USP53-201ENST00000274030 IGHV7-4-1A0A0J9YVY3 117 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 ZNF491Q8N8L2 437 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 DNAJC30Q96LL9 226 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 COX11Q9Y6N1 276 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 PLXND1Q9Y4D7 1925 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 A0A0J9YY99 117 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 PRB1P04280 392 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 LURAP1LQ8IV03 231 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 TMEM141Q96I45 108 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 ANGP03950 147 aaKnown RBP9.06□□□□□ -0.96
USP53-201ENST00000274030 CGB3P0DN86 165 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 PRSS33Q8NF86 280 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 VOPP1Q96AW1 172 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 NCOR1P1Q9H4R4 102 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 NDUFA12Q9UI09 145 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 SHISA9B4DS77 424 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 IGLV2-23P01705 113 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 ATP6V0BQ99437 205 aa9.06□□□□□ -0.96
USP53-201ENST00000274030 SMIM27A0A1W2PRY6 76 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 SPINK8P0C7L1 97 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 FOXE3Q13461 319 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 IGLL1P15814 213 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 DYNAPQ8N1N2 210 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 NKAPP1Q8N9T2 125 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 TMEM126AQ9H061 195 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 TMEM14CQ9P0S9 112 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 THAP8Q8NA92 274 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 TRAV25A0A0B4J276 109 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 SUMO4Q6EEV6 95 aa9.05□□□□□ -0.96
USP53-201ENST00000274030 CUL9Q8IWT3 2517 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 HOXB4P17483 251 aaPredicted RBP9.04□□□□□ -0.96
USP53-201ENST00000274030 RPL32P62910 135 aaKnown RBP9.04□□□□□ -0.96
USP53-201ENST00000274030 C11orf53Q8IXP5 236 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 SMIM2Q9BVW6 85 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 NOP10Q9NPE3 64 aaKnown RBP9.04□□□□□ -0.96
USP53-201ENST00000274030 CACNA1AO00555 2505 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 PRSS29PA6NIE9 313 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 CGB7P0DN87 165 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 FAM231DQ6ZW35 169 aa9.04□□□□□ -0.96
USP53-201ENST00000274030 PTPN13Q12923 2485 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 IGLC7A0M8Q6 106 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 IGHV2-5P01817 119 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 KLF5Q13887 457 aaPredicted RBP9.03□□□□□ -0.96
USP53-201ENST00000274030 NRGNQ92686 78 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 OVOL2Q9BRP0 275 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 EML6Q6ZMW3 1958 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 K7EN84 100 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 IGLC2P0DOY2 106 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 IGLC3P0DOY3 106 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 FGF6P10767 208 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 PIP4P1Q86T03 277 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 APRG1Q8IVJ8 170 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 DKK2Q9UBU2 259 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 APOC4P55056 127 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 IGLV3-1P01715 115 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 HOXD3P31249 432 aaPredicted RBP9.03□□□□□ -0.96
USP53-201ENST00000274030 MAJINQ3KP22 176 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 ETDBQ3ZM63 59 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 C20orf144Q9BQM9 153 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 AGPAT4-IT1Q9H0P7 198 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 J3QLI3 93 aa9.03□□□□□ -0.96
USP53-201ENST00000274030 K7ERJ3 54 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms